Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq236 105 1e-17 >seq236 Length=1144 Score = 105 bits (116), Expect = 1e-17 Identities = 233/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 129127 TTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATAGAGTTGCGGCA 129186 || ||||| || | |||| ||||| || |||||||| ||||| | | || || ||| Sbjct 1143 TTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGCA 1084 Query 129187 CCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGTATTTCCAAAAT 129246 || || || || || ||||| || ||| ||||| || |||||||| | || | || Sbjct 1083 CCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAAC 1024 Query 129247 GGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGAT-CCCTCGGCACGAAT 129305 || || |||||||| |||| || | ||||| || | | ||| ||||| || Sbjct 1023 GGAATGCAGCCGGTATGGAAAGCTTCTCCACCGCGAAT-CGGGCTACCCAACGCACGGAT 965 Query 129306 -CGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATATAGTCAACGATAGAACTAG 129364 || |||| |||||||||||| || || |||| | | || | || || | || | Sbjct 964 GCGGCCCGC-GTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCTTG 906 Query 129365 CGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGACACAAGAGCTAAACT 129424 ||| || || || |||||| || |||||||||||| ||||| ||||| |||| Sbjct 905 AGGTGGCATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCTGAACT 846 Query 129425 GCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAGA 129468 | || || || || || || || | | || || || |||||| Sbjct 845 GACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGA 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720634815048480