Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq7552 111 2e-19
seq7526 89.7 6e-13
seq7516 82.4 9e-11
>seq7552
Length=2500597
Score = 111 bits (122), Expect = 2e-19
Identities = 130/174 (75%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 158472 AGGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGT 158531
|||||| ||||| || ||||| || ||||| |||||||| ||||| ||| ||| | ||
Sbjct 330229 AGGATGCTATGGCCGGGTGGCTCCACGTTCCGGTTTGGCCGTGAAAAACTTCATCGATGT 330288
Query 158532 TGGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCA 158591
|| || || ||| |||| || || || | ||| ||| || || ||||||||
Sbjct 330289 GGGCGCCGGTGTCGTCGACGAGGACTACCGGGGTAACGTCGGAGTTGTACTGTTCAATCA 330348
Query 158592 TG--GAGACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTT 158643
| ||||||| ||||||| |||||||| |||||||||||||||||| || ||
Sbjct 330349 TTCCGAGACAA--ACTTTGAAGTTAAGAAAGGTGATCGCATCGCACAGTTTATT 330400
>seq7526
Length=6110091
Score = 89.7 bits (98), Expect = 6e-13
Identities = 314/480 (65%), Gaps = 14/480 (3%)
Strand=Plus/Minus
Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556
|||| |||||||| || || || || || || || | || || || || || |||||
Sbjct 3350792 ATCTGCCGATCGAAGCGGCCCGGTCGCAGCAGCGCCTTGTCGAGGATGTCCACCCGGTTG 3350733
Query 11557 GTAGCGGCAATGACTACAATGCCAGTC-TCAT--TGTCGAAACCGTCCATTTCTGTGAGA 11613
|| ||||| | || || | || || | | ||| ||| |||||||| || ||
Sbjct 3350732 GTGGCGGCCAGCACGACCA---CATTCGTGGTCGTGTTGAACCCGTCCATCTCCACCAGC 3350676
Query 11614 AGCTGGTTGATCGTCTGTTCAC--GCTCATCGTTGGAGGGCATACCACCTGCCGAA-CGC 11670
|||||||| | || ||||| | |||| || || | | | | ||||| |||
Sbjct 3350675 AGCTGGTTCA--GTGTGTTCTCCTGCTCCGAGT-GGCCGCCGAAGCTTTTGCCGCCGCGC 3350619
Query 11671 TTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCC 11730
|| ||||| || || || || |||||||| | || ||||| ||| || |||
Sbjct 3350618 TTTCGTCCGACCGCATCGATTTCGTCGATGAAGAGAATGCACGGCGCGTTCTTGCGGGCC 3350559
Query 11731 TGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790
|||| | || ||||| ||| || ||| || || || ||||| || | || |
Sbjct 3350558 ATGGCGAACATGTCGCGTACGCGCGACGGTCCCACGCCGACAAACATTTCCAAAAACTCC 3350499
Query 11791 GCGGCAGAACACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849
| | || ||| | ||||||||| || || | || || || |||| ||||| ||
Sbjct 3350498 GACCCGGA-CACGGTAATGAAGGGTACGTTCGCTTCCCCTGCCGTGGCCTTCGCGAGCAG 3350440
Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACT 11909
|| ||||||||||| || | || | || | |||||| ||| |||||||||||
Sbjct 3350439 CGTTTTACCCGTACCGGGCGGTCCGGTCAGCATGGCGCCCTTGGGTATCTTGGCACCGAG 3350380
Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
| | ||| ||| || || |||||||||| |||| |||| || ||| ||||||
Sbjct 3350379 ATCGATGTATTGCTGGGGATTTTTGAGGAAGTTGACAAACTCCATAATTTCGATCTTGGC 3350320
>seq7516
Length=3907879
Score = 82.4 bits (90), Expect = 9e-11
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 167506 AGCTTCGTAAAGATGTACCTCGT-CTGAGACGCA-TCCTTGCCACCCATGAGGCGTGTAC 167563
||| |||| ||||||||||| | ||| ||| |||||||||||| | || || ||||
Sbjct 2870255 AGCATCGTGAAGATGTACCTGGGGCTGG--CGCTGTCCTTGCCACCCGTCAGCCGCGTAC 2870198
Query 167564 CAAATTGACCACATGGCTCGAGAAGATTGATGTTATTCGACCCCGTATAATCGTTGGCCA 167623
| || ||||| | || | || ||||||||||| || || || | | ||||
Sbjct 2870197 CGAACTGACCGCCCGGGTACAGCAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCA 2870138
Query 167624 ACTTGACGATCGTTTCAGC-GAGGGAAACTTCGCCGTGGTGGTAAGCACTCTTTTCAGCC 167682
|||| ||||| | ||| ||| || | |||||||| ||||| || |||||| |||
Sbjct 2870137 GGTTGATGATCG-TCGAGCAGAGCGACATCTCGCCGTGATGGTAGGCGGACTTTTCCGCC 2870079
Query 167683 ACATATGCTGCCAACTGTGCAACCTTCATCTC 167714
|| | | |||| ||| || ||||||| |||
Sbjct 2870078 ACCGAACCGGCCAGCTGGGCCACCTTCACCTC 2870047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588898542293800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |