Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7552 140 4e-28 >seq7552 Length=2500597 Score = 140 bits (154), Expect = 4e-28 Identities = 439/672 (65%), Gaps = 15/672 (2%) Strand=Plus/Plus Query 105940 GTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 105999 ||||| |||||| || || || ||||||| || || | |||||||| ||||| || || Sbjct 1135282 GTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGT 1135341 Query 106000 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAG 106059 ||||| || |||| || || || |||| || | | ||| |||||| | Sbjct 1135342 CGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAA 1135401 Query 106060 AACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG-AAGCAC 106116 | |||||| | || | | | |||| | |||| |||| || | || ||| Sbjct 1135402 CTCGGCCCAGTTCCACAGATCCG-TCGGTTCCTTGTTCC-ACATCTCGTACTGCAAGATG 1135459 Query 106117 CCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC 106176 |||||| | ||| ||||| | ||||| || | ||| | | ||||| || Sbjct 1135460 CCCTTGCT-CACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTC 1135518 Query 106177 ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTT 106236 ||||||||| ||||| | ||| || |||||||| || || | ||| | || | Sbjct 1135519 ACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTG 1135578 Query 106237 GGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAAC 106296 || || || || | | ||||| || || || |||| || | || || || Sbjct 1135579 AGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCAC 1135638 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATA 106353 || | || || || ||||| |||||||| || ||| || ||| |||||||| Sbjct 1135639 GCCGATCCCGATCGGCCTGTGGCGCATATTGGAG---CGCTTAGCCTCCGGCACGGGATA 1135695 Query 106354 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAG 106413 |||| ||||||| | ||| ||||| || || |||| | || ||| | || Sbjct 1135696 GTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAG 1135755 Query 106414 TTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 106473 ||| || | ||| | || | |||| || ||| || | | |||||| || || Sbjct 1135756 CTTTGCAAAGTCATACGTTT---TGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGC 1135812 Query 106474 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTT 106533 || |||||| || || ||||||||| | |||||||| |||||| || |||||||| Sbjct 1135813 CAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCTACAATTTCAGTGCACAAGTT 1135872 Query 106534 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTA 106593 ||||| || || || || | ||||| |||||||| || ||||| ||||||||||| Sbjct 1135873 GGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTA 1135932 Query 106594 GAGCATGTAGGG 106605 |||||||| || Sbjct 1135933 CAGCATGTACGG 1135944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589903210150040