Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq236 215 3e-51 >seq236 Length=1144 Score = 215 bits (238), Expect = 3e-51 Identities = 251/339 (74%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 71158 CCAACACCTATTATGGGTGGTGTACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAG 71217 || || || || ||| ||| || ||||| ||||| | || || || ||||| | Sbjct 806 CCTACGCCAATCATGTCTGGCGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTGCTG 865 Query 71218 ATTGACAGTGGCGATAGCCTAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTAT 71277 || || |||| |||||||| ||||| ||||||||| | ||||| | ||||| || || Sbjct 866 ATCGAATGTGGTGATAGCCTGGATTCGATTAATGCCACCTCAAGCGCCATTGTGAAATAC 925 Query 71278 GTATCCAAACGTGCAGGTATCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCT 71337 || ||| ||||||| || ||||| ||||| | ||| || ||||| || || || || Sbjct 926 GTTTCCCAACGTGCGGGGATCGGCATCAACGCGGGCCGCATCCGTGCGTTGGGTAGCCCG 985 Query 71338 ATACGCAATGGTGAAGCAGTTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACA 71397 || ||| ||| ||||| | ||||| || | || || |||| ||||||||||| || Sbjct 986 ATTCGCGGTGGAGAAGCTTTCCATACCGGCTGCATTCCGTTCTACAAGCATTTCCAGACC 1045 Query 71398 GCAGTCAAATCTTGCTCTCAGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCT 71457 || || ||||| ||||||||||| ||| | |||||||||||||| || ||||||||| Sbjct 1046 GCCGTAAAATCCTGCTCTCAGGGCGGCGTGCGTGGTGGTGCTGCCACGTTGTTCTACCCG 1105 Query 71458 ATGTGGCATTTAGAAGTTGAAAGCCTTTTAGTATTGAAA 71496 ||||||||| | ||||| |||||||| | || ||||| Sbjct 1106 ATGTGGCATCTGGAAGTCGAAAGCCTGCTGGTGCTGAAA 1144 Score = 84.2 bits (92), Expect = 1e-11 Identities = 183/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 70552 GTAACAAAACGTGATGGTGGATTAGCACCTTTGGATTTAGATAAGATCCATAAAGTAATC 70611 ||||| ||||| ||||| | || || | || | || || ||||| || ||| Sbjct 203 GTAACTAAACGCGATGGCCGTAAAGAACGCATCAATCTCGACAAAATCCACCGGGTCATC 262 Query 70612 GCATGGGCTGCAGAGGGACTTGAAAATGTCTCAGTATCTCAAGTTGAATTGAAATCTCAT 70671 | ||||| ||||| || | | || ||||| ||||||||||| || ||| || ||| Sbjct 263 GATTGGGCCGCAGAAGGTTTACACAACGTCTCGGTATCTCAAGTAGAGTTGCGTTCACAT 322 Query 70672 ATCCAATTTTATGAAGGTATGAAGACAGAAGATATTCACGAAATAATCATTAAAGCAGCA 70731 || || || || || || || || || | |||||||| |||| || || ||||| || Sbjct 323 ATTCAGTTCTACGACGGCATCAAAACCGCCGATATTCATGAAACTATTATCAAAGCGGCT 382 Query 70732 GCAGATTTAATATCGGTTGACACTCCTGATTATCAGTATCTCTCATCTCGTTTAGCCGTA 70791 || ||| | || || || | || || ||||||||||| | | || || || | Sbjct 383 GCCGATCTGATCTCCCGCGATGCGCCAGACTATCAGTATCTGGCCGCGCGCTTGGCGATC 442 Query 70792 TTTCATTTACGTAAACAAGCCTATGGTGATTTTG 70825 || || | || ||| |||| || || | |||| Sbjct 443 TTCCACCTGCGCAAAAAAGCTTACGGCCAGTTTG 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335627358767857