Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq7525 114 1e-20
seq7521 113 4e-20
seq7517 93.3 3e-14
>seq7525
Length=4038190
Score = 114 bits (126), Expect = 1e-20
Identities = 206/301 (68%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711
|||||||| || || || || ||| | ||||||| || ||||||||| ||||| |||
Sbjct 440101 TTGAATTTACGCTTGCATCCGTCATAGTTCATGTACCGAATTTTACCAAAGATTTCGCGC 440042
Query 13712 TCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTG 13771
||| ||||| | ||||||| | || || ||||||||||||||| | || |||||
Sbjct 440041 TCCTTCCAGCCCTGATCGTGGATGCCCGCGATCGACCACATGCAACCGACGTACCCGTTC 439982
Query 13772 GGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACT 13831
||||| || ||||||| |||||| ||||| | ||| || || | | || |
Sbjct 439981 GGATCCCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCC 439922
Query 13832 GTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891
|||| | | ||| || | || ||||| ||||| || || | || | ||||||
Sbjct 439921 TCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGC 439862
Query 13892 ATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTTCG 13951
|| ||||| | | | | ||| ||| || | |||||||| |||||| |||| |
Sbjct 439861 ATCTTGCCCTCCTTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTG 439802
Query 13952 G 13952
|
Sbjct 439801 G 439801
>seq7521
Length=12184106
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341
|| || || ||||| |||| || ||| | |||| |||| ||||| || || || |||
Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217
Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401
| |||||| ||||| || ||||||||||| || || || || ||| || ||| | ||
Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277
Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461
| ||||| || | || || ||||| |||| || |||||||| | ||||| || ||
Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337
Query 101462 ATCTGCATGGTT 101473
||||||||| ||
Sbjct 9381338 ATCTGCATGTTT 9381349
>seq7517
Length=11427604
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || | ||| || || || || || ||||| |||| | ||| | | || |||
Sbjct 2898492 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 2898433
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||||| || || ||||||||||| ||||| || |||||||| || || || ||
Sbjct 2898432 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898373
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| |||| || || || || |||| || |||
Sbjct 2898372 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898313
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || || || ||||||||
Sbjct 2898312 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || | ||| || || || || || ||||| |||| | || | | || |||
Sbjct 2898720 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCC 2898661
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||||| || || ||||||||||| ||||| || |||||||| || || || ||
Sbjct 2898660 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898601
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| |||| || || || || |||| || |||
Sbjct 2898600 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898541
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | || || || || |||||||||
Sbjct 2898540 CCAGTCAGCGTCTTCACGAAGATCTGCATG 2898511
Score = 89.7 bits (98), Expect = 4e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331
||| || || || || || ||||| |||| | || | | || |||| ||||||||
Sbjct 2898937 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACC 2898878
Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391
|| || ||||||||||| ||||| || |||||||| || || || || || || ||
Sbjct 2898877 GGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 2898818
Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451
|| | || | ||||| |||| || || || || |||| || ||||| || | ||
Sbjct 2898817 CACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGT 2898758
Query 101452 TTTTACAAATATCTGCATG 101470
|| || || |||||||||
Sbjct 2898757 CTTCACGAAGATCTGCATG 2898739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396227587325997
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |