Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7525 114 1e-20 seq7521 113 4e-20 seq7517 93.3 3e-14 >seq7525 Length=4038190 Score = 114 bits (126), Expect = 1e-20 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711 |||||||| || || || || ||| | ||||||| || ||||||||| ||||| ||| Sbjct 440101 TTGAATTTACGCTTGCATCCGTCATAGTTCATGTACCGAATTTTACCAAAGATTTCGCGC 440042 Query 13712 TCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTG 13771 ||| ||||| | ||||||| | || || ||||||||||||||| | || ||||| Sbjct 440041 TCCTTCCAGCCCTGATCGTGGATGCCCGCGATCGACCACATGCAACCGACGTACCCGTTC 439982 Query 13772 GGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACT 13831 ||||| || ||||||| |||||| ||||| | ||| || || | | || | Sbjct 439981 GGATCCCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCC 439922 Query 13832 GTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891 |||| | | ||| || | || ||||| ||||| || || | || | |||||| Sbjct 439921 TCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGC 439862 Query 13892 ATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTTCG 13951 || ||||| | | | | ||| ||| || | |||||||| |||||| |||| | Sbjct 439861 ATCTTGCCCTCCTTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTG 439802 Query 13952 G 13952 | Sbjct 439801 G 439801 >seq7521 Length=12184106 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 || || || ||||| |||| || ||| | |||| |||| ||||| || || || ||| Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 | |||||| ||||| || ||||||||||| || || || || ||| || ||| | || Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | ||||| || | || || ||||| |||| || |||||||| | ||||| || || Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337 Query 101462 ATCTGCATGGTT 101473 ||||||||| || Sbjct 9381338 ATCTGCATGTTT 9381349 >seq7517 Length=11427604 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 2898492 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 2898433 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| || || ||||||||||| ||||| || |||||||| || || || || Sbjct 2898432 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898373 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| |||| || || || || |||| || ||| Sbjct 2898372 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898313 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || |||||||| Sbjct 2898312 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || || || || || ||||| |||| | || | | || ||| Sbjct 2898720 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCC 2898661 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| || || ||||||||||| ||||| || |||||||| || || || || Sbjct 2898660 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898601 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| |||| || || || || |||| || ||| Sbjct 2898600 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898541 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || || || ||||||||| Sbjct 2898540 CCAGTCAGCGTCTTCACGAAGATCTGCATG 2898511 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || || || || || ||||| |||| | || | | || |||| |||||||| Sbjct 2898937 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACC 2898878 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 || || ||||||||||| ||||| || |||||||| || || || || || || || Sbjct 2898877 GGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 2898818 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 || | || | ||||| |||| || || || || |||| || ||||| || | || Sbjct 2898817 CACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGT 2898758 Query 101452 TTTTACAAATATCTGCATG 101470 || || || ||||||||| Sbjct 2898757 CTTCACGAAGATCTGCATG 2898739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396227587325997