Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq7552 163 2e-35
seq7521 96.9 3e-15
seq7517 96.9 3e-15
seq7535 84.2 2e-11
>seq7552
Length=2500597
Score = 163 bits (180), Expect = 2e-35
Identities = 226/314 (72%), Gaps = 8/314 (3%)
Strand=Plus/Minus
Query 8993 AATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGT---CGT-GGAA 9048
||||||| ||||| || || || |||||| |||| || | || || || ||| ||||
Sbjct 330494 AATTAGTGCCGGTCGATCCGAAACCTCCCGCTCCACGCTCCGTATCGGTAAGCGTTGGAA 330435
Query 9049 GTAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCC 9108
| |||| ||| |||||| |||| || ||||| || || || || | ||
Sbjct 330434 G----CTCTTCCAAATCCGGATAAGCTATTTTCTCGCAAATAAACTGTGCGATGCGATCA 330379
Query 9109 CCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCC 9168
|| || || || |||||| ||| ||||||||||||||||| || ||||| |||||||||
Sbjct 330378 CCTTTCTTAACTTCAAAGTTTGTCTCGGAATGATTGAACAGTACAACTCCGACGTTACCC 330319
Query 9169 CTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCA 9228
| ||| ||||| |||| ||||| || ||||| |||||||||| || || || | ||
Sbjct 330318 CGGTAGTCCTCGTCGACGACACCGGCGCCCACATCGATGAAGTTTTTCACGGCCAAACCG 330259
Query 9229 GAGCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATG 9288
|| || || || | || || |||||||| |||| | || ||| | | |||||||||
Sbjct 330258 GAACGTGGAGCCACCCGGCCATAGCATCCTTCCGGCACCTGGACCTGGATGTCGGTCATC 330199
Query 9289 ACCAGCCCCTTGCC 9302
|| ||| |||||
Sbjct 330198 ACGAGCTGTTTGCC 330185
>seq7521
Length=12184106
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638
|| ||||| ||||| || || ||| | ||| | || |||| |||||| ||||| || |||
Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217
Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698
|| ||||| ||||| | ||||| ||| |||||||| |||||| || ||| |
Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277
Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758
| | || || | ||| ||||| | || || || || || || | ||||| || |||
Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337
Query 48759 ATCTGCAT 48766
||||||||
Sbjct 9381338 ATCTGCAT 9381345
>seq7517
Length=11427604
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || ||||| || || ||| | || |||| |||| |||||||||||| ||
Sbjct 2898475 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAA 2898416
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| ||||| ||||| | |||| |||||||||||| ||||| || ||
Sbjct 2898415 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 2898356
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || |||| ||| ||||||| ||| || || || || |||| || || ||
Sbjct 2898355 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 2898296
Query 48755 AAAAATCTGCATC 48767
|| |||||||||
Sbjct 2898295 GAAGATCTGCATC 2898283
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || ||||| || || | | || |||| |||| |||||||||||| ||
Sbjct 2898703 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAA 2898644
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| ||||| ||||| | |||| |||||||||||| ||||| || ||
Sbjct 2898643 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 2898584
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || |||| ||| ||||||| ||| || || || || |||| || || ||
Sbjct 2898583 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 2898524
Query 48755 AAAAATCTGCAT 48766
|| ||||||||
Sbjct 2898523 GAAGATCTGCAT 2898512
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || ||||| || || | | || |||| |||| |||||||||||| ||
Sbjct 2898931 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAA 2898872
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| ||||| ||||| | |||| |||||||||||| ||||| || ||
Sbjct 2898871 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 2898812
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || |||| ||| ||||||| ||| || || || || |||| || || ||
Sbjct 2898811 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 2898752
Query 48755 AAAAATCTGCAT 48766
|| ||||||||
Sbjct 2898751 GAAGATCTGCAT 2898740
>seq7535
Length=3646130
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| ||| || || ||| || || || || || || || || | || | || |||
Sbjct 875826 ACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 875885
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| ||||| || ||||| ||||| ||||| | || | |||||||||||
Sbjct 875886 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 875945
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | ||| || |||| || || || |||
Sbjct 875946 ATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACTTCCAGGGTGATGGTCTTT 876005
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| |||||| || |||||||||||
Sbjct 876006 CCGGTCAGAGTTTTCACGAAAATCTGCAT 876034
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| ||| || ||| ||| || || || || || || || || | || | || |||
Sbjct 876054 ACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 876113
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || || || ||||| ||||| ||||| | || | |||||||||||
Sbjct 876114 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 876173
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | ||| ||||| | || || || |||
Sbjct 876174 ATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCGAGGGTGATGGTCTTT 876233
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| |||||| || |||||||||||
Sbjct 876234 CCGGTCAGAGTTTTCACGAAAATCTGCAT 876262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380888754395283
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |