Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq236 187 3e-42 >seq236 Length=1144 Score = 187 bits (206), Expect = 3e-42 Identities = 271/379 (72%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 40684 TTCTATAACGCAATTTCGGATCGT-AAACTGTCATTACCTACGCCTATTATGGCGGGTGT 40742 |||||| |||| ||||| | | | ||| | || | |||||||| || ||| | || || Sbjct 770 TTCTATGACGCCATTTCT-ACCTTCAAAATTTCTCTGCCTACGCCAATCATGTCTGGCGT 828 Query 40743 GCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGG 40802 |||||| || || ||||||||| | ||||| | ||||||| |||||| |||| Sbjct 829 GCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTGCTGATCGAATGTGGTGATAGCCTGGA 888 Query 40803 TTCTCTGAACGCTGTTACGTC---CGCGATCGTGAAGTATATCTCTCAACGTGCTGGTAT 40859 ||| | || || || || ||| || ||||| || | || |||||||| || || Sbjct 889 TTCGATTAATGCC---ACCTCAAGCGCCATTGTGAAATACGTTTCCCAACGTGCGGGGAT 945 Query 40860 TGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGT 40919 || ||||||| || | ||| || || ||||| || || ||||| ||||| | Sbjct 946 CGGCATCAACGCGGGCCGCATCCGTGCGTTGGGTAGCCCGATTCGCGGTGGAGAAGCTTT 1005 Query 40920 ACATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCCTGTTCCCA 40979 ||||| ||| || ||||||| || || | ||||| || || |||||||| || || Sbjct 1006 CCATACCGGCTGCATTCCGTTCTACAAGCATTTCCAGACCGCCGTAAAATCCTGCTCTCA 1065 Query 40980 GGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGA 41039 |||||| || ||||||||||| || || ||| || ||||| |||||||| ||||| || Sbjct 1066 GGGCGGCGTGCGTGGTGGTGCTGCCACGTTGTTCTACCCGATGTGGCATCTGGAAGTCGA 1125 Query 41040 AAACCTGTTGGTTCTGAAA 41058 || |||| |||| |||||| Sbjct 1126 AAGCCTGCTGGTGCTGAAA 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570014626091480