Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7552 273 4e-68 seq7526 154 3e-32 seq7514 95.1 2e-14 >seq7552 Length=2500597 Score = 273 bits (302), Expect = 4e-68 Identities = 873/1328 (66%), Gaps = 72/1328 (5%) Strand=Plus/Plus Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || ||| |||| || | |||||| || || || ||||| | ||| | ||||| ||| || Sbjct 1135229 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 1135288 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||||| || ||||| || ||||| ||||| ||| || || ||||| Sbjct 1135289 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 1135348 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080 || |||| ||| || || | | ||||||| | |||| | | ||| ||| Sbjct 1135349 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 1135408 Query 213081 CAGTCCCATCTGCCAGACAGGTCC-TCG--TCCTTCACGTTCCACATGTCAAACTGCAAG 213137 |||| ||| ||| ||| ||| ||||| ||||||||| || |||||||| Sbjct 1135409 CAGTTCCA---------CAGATCCGTCGGTTCCTT---GTTCCACATCTCGTACTGCAAG 1135456 Query 213138 ATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC-CTTGGCCAG 213196 ||||| |||||||| || ||||||| ||| | ||| || |||| ||| ||||| Sbjct 1135457 ATGCCCTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCAT-CTCGAGCGGCCAA 1135515 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 ||| ||| ||| | ||| || |||||||||||||||| ||||| | | || ||||| Sbjct 1135516 CTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTT 1135575 Query 213257 CTTGGCCTC------TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAG 213310 | ||||| | | ||| || |||||| || |||| |||| |||| Sbjct 1135576 TTGAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGAT------GAACGCATCGGCCAT 1135629 Query 213311 CCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTC 213367 ||||| || ||||| ||||| || ||||| | || || || ||| ||| |||| Sbjct 1135630 GCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTT--AGC-CTCCGG 1135686 Query 213368 CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC 213427 || ||| || | ||| || ||||| ||||| || ||||| || | || | ||| Sbjct 1135687 CACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGAC 1135746 Query 213428 ATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGGCAG 213484 | ||| | | | | | |||| ||| ||| |||||| || Sbjct 1135747 TTCCTTCAGCT--TTGCAAAGTCATACGT----TTTGTCTTGCTTTACAAACATGTTCAA 1135800 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACC---TCCTGAGAGTCTGTGTACTCCATGAT 213541 |||||| |||||| ||||| || || ||| |||| || | |||||| | || Sbjct 1135801 GGCGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGA---CGAGTACTCTACAAT 1135857 Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGAC-TTTGCG- 213599 || ||||||| |||| ||| ||||||||| | ||||| ||||| || ||| || Sbjct 1135858 TTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGA 1135915 Query 213600 TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATC 213659 ||| || ||||||||| |||||||| || ||||| || | ||| || | | ||| Sbjct 1135916 TTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATC 1135975 Query 213660 TGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718 ||| || | |||| ||||| ||| |||| | | ||| | | | |||||| Sbjct 1135976 GCAAACCACAGAT-CCTGCGCCTTCACCTGCCGCAT-AAAGCGACCCTCTT--TCTCGTA 1136031 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AGTCCCGGAC-AGG 213774 | ||| |||| | ||| || | ||||||| ||||| || || |||| | Sbjct 1136032 CCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAG---GTGTCCGATAGCCCGGGACAATC 1136088 Query 213775 ATGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCC 213833 |||||| ||||| || ||||| | | || ||| || | |||||||||||||||| Sbjct 1136089 GTGCGGG-CACATCAGACTCCACATTTCGTTCGCCTC-CACACGCTGCATGAACAGGTCC 1136146 Query 213834 GGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTG 213893 || | ||| || ||| |||| ||||| | | ||| ||| || | |||||| Sbjct 1136147 GGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTC 1136206 Query 213894 CGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCG 213953 |||||| ||||| || || || || | ||||||||||| | |||||||| || || Sbjct 1136207 TTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCT 1136266 Query 213954 CCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGG 214010 || |||| | ||||| ||||| || || || ||| ||||| ||| |||||| Sbjct 1136267 CCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGC 1136326 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | || ||||| ||||| || ||||| || || | || |||| || || | Sbjct 1136327 ATCGGCACCAGACCGTTCGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGG 1136386 Query 214071 AGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC 214130 | | || | || || ||||||||||| |||| || || | ||| || || || Sbjct 1136387 ATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTC 1136446 Query 214131 ACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAG 214190 | || || |||||| | ||||| || || | | | ||| || ||||||| ||| Sbjct 1136447 AGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAA 1136506 Query 214191 AGCTGGGG 214198 |||||||| Sbjct 1136507 AGCTGGGG 1136514 >seq7526 Length=6110091 Score = 154 bits (170), Expect = 3e-32 Identities = 283/414 (68%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| |||| || || |||| ||||| | ||||| || ||||||||| | Sbjct 4672961 CAGCAAACGATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCCAG 4673020 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 | ||| |||| ||||| || || ||||||| ||| ||| | || || || | | Sbjct 4673021 CATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGAT 4673080 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | | ||||| || || || || | ||| | |||| | | || ||| Sbjct 4673081 GATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGA---ACATCAGGCA 4673137 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||| |||||||| || ||| ||| |||| |||||| ||| || Sbjct 4673138 GGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCC 4673197 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || |||||||| || || ||||| || ||||||||| Sbjct 4673198 CGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGAT 4673257 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || ||||| || || || ||| || || || |||||| ||||| Sbjct 4673258 ACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCTCGAGAT 4673317 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||| ||||||||||| |||||| ||| | ||| |||| ||| || ||||| Sbjct 4673318 CCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 4673371 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||||||| || || || |||||||| ||||||||| | ||||| Sbjct 4673529 GTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTC 4673588 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||||| || | ||| | |||| ||||||||| || || || || || || Sbjct 4673589 CGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGA 4673648 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || ||||||||||| || || || || ||| ||||| ||| | | | || | | Sbjct 4673649 CGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGGCGTTCGCTCGGTTTCAGCGACTC 4673708 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| ||| | || ||| ||| || || |||||||| ||||| ||||| || Sbjct 4673709 CCAGTCCTTCATATCCTTGGACAGATCAACCTCTTCCACCGTCCAAAAGGAAGC 4673762 >seq7514 Length=7993369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| ||||||||| || |||||| || || || ||| ||||| Sbjct 5478300 CTTCAGCTCCTTCACCCGGTCCTCCAGCTTCGAGATGCGCTCGAGCTTCCGCTTCCGGCA 5478359 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||||| || | ||| || ||| ||||||||| ||||| Sbjct 5478360 CTTGGAGGCGGCGACCCGGTTCCGCAGCCGCTTGCGCTCCAGCTTGATGCGCTCCTGCGA 5478419 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 5478420 CTCCATGTCGATCGG 5478434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931410291792640