Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7552 197 3e-45 seq7526 129 1e-24 >seq7552 Length=2500597 Score = 197 bits (218), Expect = 3e-45 Identities = 653/997 (65%), Gaps = 40/997 (4%) Strand=Plus/Plus Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GC 221568 ||||||| ||||| || ||||| ||||| |||||||| | | | ||||| ||| || Sbjct 1135622 TCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGA-GCGCTTAGC 1135680 Query 221569 TTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTT 221628 || ||||||||||| | ||||| || || | ||||| || || | || | | || Sbjct 1135681 CTCCGGCACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTT 1135740 Query 221629 AACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTC 221688 | | || || ||||||| || | || || ||| || | || Sbjct 1135741 AGCGACTTCCTTCAGCTT--------TGCA----AAGTCATA--CGTTTTGTCTTGCTTT 1135786 Query 221689 CACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGT 221748 ||||| ||| | ||| | |||||| || || || || ||||| ||||| | Sbjct 1135787 -ACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACGA 1135845 Query 221749 ATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATT 221808 |||| || || || || || | |||| || |||||||| || | | | || || Sbjct 1135846 GTACTCTACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT 1135905 Query 221809 AGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGC 221868 | || |||||| ||| |||||||| ||||| | || |||| || |||| ||| | Sbjct 1135906 ACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGA 1135965 Query 221869 CACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGG 221927 | | ||| ||| || || ||| || ||||| || | | | |||||| Sbjct 1135966 TTCGATGATCGCAAACCACAGATC-CTGCGCCTTCACCTGCCGCATAAAGCGACCCTCTT 1136024 Query 221928 TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTG 221987 ||| | ||||| || || ||| | || |||| ||| || | | || || || | Sbjct 1136025 TCT---CGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGG 1136081 Query 221988 GACACCTG-GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAG 222046 |||| | ||||| |||||||||||||| | ||| | | || | ||||||||| Sbjct 1136082 GACAATCGTGCGGG-CACATCAGACTCCACATTTCGTTCGCCTCCACACGCTGCATGAAC 1136140 Query 222047 AGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGT 222104 |||||||| ||||| || || | || | || || || ||| | ||||||| |||| Sbjct 1136141 AGGTCCGGTATCCAGAGTGC--GTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGG 1136198 Query 222105 TGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGG 222164 |||||||| ||||||| | |||||| || || ||| | ||||||||||| ||||||| || Sbjct 1136199 TGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATGG 1136258 Query 222165 CCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGA 222224 | | || || || |||||||||||||||||||| || || || | |||| ||| Sbjct 1136259 CGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGA 1136318 Query 222225 TGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGC 222284 ||| || |||| ||||| ||||| || ||||| || || ||||||| || Sbjct 1136319 CGCGCAGCATCGGCACCAGACCGTTCGAAATCCCGTTCGTACCGGAGATGTACGTTCCCT 1136378 Query 222285 CGGCCCTCAGGTTACTG-GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGG 222341 || | || ||| | ||| || ||||| |||||||| || || || | || Sbjct 1136379 TCGCGC---GGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGG 1136435 Query 222342 CGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAA 222401 | || ||| || ||||| ||||||||| || || || | | ||| ||| | Sbjct 1136436 CACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGA 1136495 Query 222402 AACAAGACGACATCT---GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGT 222458 | || ||||| | || || | |||| | | || ||||| || || ||||| Sbjct 1136496 AGCAGGACGAAAGCTGGGGACGCTGAGTGG--CCGCCG-CAAACATAGTTGGCGAGGCGT 1136552 Query 222459 GTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 | |||||||| | | |||| ||||| ||| ||||| Sbjct 1136553 GGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTC 1136589 >seq7526 Length=6110091 Score = 129 bits (142), Expect = 1e-24 Identities = 185/260 (71%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 |||||| || ||||| ||||||||| | || || | ||| |||||||| | Sbjct 4673389 AGAGAGTTC--CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGACT 4673332 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| |||| |||||| ||| ||| || | |||||||||||| | || || || | Sbjct 4673331 GGGCGCTGAACTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCG 4673272 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 |||| || ||||| ||||| ||||||||| || || || ||||||||||| ||| || Sbjct 4673271 CTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGC 4673212 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||| || || ||| || |||||||| ||| | ||||| || || | Sbjct 4673211 GTGGCCTGATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGC 4673152 Query 26015 ACAGAGATTTTGCCTGCCTG 26034 || | || |||||||||||| Sbjct 4673151 ACTGCGACTTTGCCTGCCTG 4673132 Score = 113 bits (124), Expect = 8e-20 Identities = 164/228 (72%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCCA 25570 ||||| | |||||| |||||||| ||||||| ||| | | |||| | |||| | || Sbjct 4673753 TGGACGGTGGAAGAGGTTGATCTGTCCAAGGATATGAAGGACTGGGAGTCGCTGAAACCG 4673694 Query 25571 AAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAG 25630 | ||| | || || | ||||| |||| |||||||| || || || ||||| | Sbjct 4673693 AG--CGAACGCCACTTCATTTCCCACGTGCTGGCCTTCTTTGCCGCGTCCGACGGTATCG 4673636 Query 25631 TGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTG 25688 |||||||||||||| || | |||| | ||| |||||| |||| ||||| || Sbjct 4673635 TGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTACG--GAGGCGCGCTG 4673578 Query 25689 TTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 |||||||| |||||||| || || |||||||||||| ||| |||| Sbjct 4673577 CTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATGTA 4673530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928722645298240