Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_019530.1 Length=157785 Score E Sequences producing significant alignments: (Bits) Value seq236 122 9e-23 >seq236 Length=1144 Score = 122 bits (134), Expect = 9e-23 Identities = 201/286 (70%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 52784 CCACCACGGATACCGCCTTGAGAGCAAGACTTCAGGGCACCAGTC---AAATACTTGATG 52840 |||||||| | ||||| |||||||| || || | ||| ||| |||| |||| | Sbjct 1083 CCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCG---GTCTGGAAATGCTTGTAG 1027 Query 52841 AATGGAAC-CAGACCTGTATGGACCATTTCCCCTTTACGGATAGGGCTACCGATGCCACG 52899 || |||| ||| || ||||||| ||| || || || |||||||| | |||| Sbjct 1026 AACGGAATGCAG-CCGGTATGGAAAGCTTCTCCACCGCGAATCGGGCTACCCAACGCACG 968 Query 52900 AATTGCCCCAACATCGAATCCGATGCCAGCACGTTTGGAAACATAATCCACGATGCTTTT 52959 || || | | || ||||| || ||||||| |||||| || | ||| ||| | Sbjct 967 GATGCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCT 908 Query 52960 CGCAGTGGCATTAATTGAGTCCAATGTATCACCAGTTTTGATCAATACACAAGAGCTGAA 53019 | ||||||||||| || |||| |||||||| || ||||| ||||| |||||||| Sbjct 907 TGAGGTGGCATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCTGAA 848 Query 53020 CTGTCGGGTCGGGGTGCGGACGCCGGACATAATAGGTGTTGGAAGA 53065 ||| ||||| || || || ||||| ||||| || || || || ||| Sbjct 847 CTGACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGA 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504717614594200