Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq236 178 1e-39 >seq236 Length=1144 Score = 178 bits (196), Expect = 1e-39 Identities = 267/378 (71%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 40423 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 40482 ||| ||| |||| ||||| |||| | ||||| || || ||||| ||| | || || Sbjct 769 TTTCTATGACGCCATTTCTACCTTCAAAATTTCTCTGCCTACGCCAATCATGTCTGGCGT 828 Query 40483 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 40542 ||||| || || || |||||| | ||||| | || |||| |||||| || | Sbjct 829 GCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTGCTGATCGAATGTGGTGATAGCCTGGA 888 Query 40543 TTCTCTTAACGCTGTAACCTCT---GCGATCGTGAAGTATATTTCACAACGTGCTGGTAT 40599 ||| |||| || ||||| || || ||||| || |||| |||||||| || || Sbjct 889 TTCGATTAATGCC---ACCTCAAGCGCCATTGTGAAATACGTTTCCCAACGTGCGGGGAT 945 Query 40600 TGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGT 40659 || | |||||||| | || || || ||||| || || ||||| |||||| | Sbjct 946 CGGCATCAACGCGGGCCGCATCCGTGCGTTGGGTAGCCCGATTCGCGGTGGAGAAGCTTT 1005 Query 40660 TCATACTGGTGTGATTCCTTTCTGGAAACATATTCAAACCGCTGTTAAATCCTGTTCACA 40719 ||||| || ||||| |||| || ||| | || ||||| || |||||||| || || Sbjct 1006 CCATACCGGCTGCATTCCGTTCTACAAGCATTTCCAGACCGCCGTAAAATCCTGCTCTCA 1065 Query 40720 GGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGA 40779 ||| ||||| |||||||||||||| || ||| || || | |||||||||||||| || Sbjct 1066 GGGCGGCGTGCGTGGTGGTGCTGCCACGTTGTTCTACCCGATGTGGCATCTGGAAGTCGA 1125 Query 40780 AAACCTTCTGGTGTTGAA 40797 || ||| |||||| |||| Sbjct 1126 AAGCCTGCTGGTGCTGAA 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557920216866680