Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7535 102 5e-16 seq7552 89.7 3e-12 seq9485 87.8 1e-11 >seq7535 Length=3646130 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || |||||||| || || || | ||||| || | || || Sbjct 876041 ACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGT 876100 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 876101 GCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 876160 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| ||||| | || | || || | Sbjct 876161 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAA-CCTCGA 876219 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| ||||| || |||||||| || Sbjct 876220 GGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTG 876259 >seq7552 Length=2500597 Score = 89.7 bits (98), Expect = 3e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 || ||||| || ||||||||||| ||||||||| | |||||||| || |||| ||| Sbjct 1832642 GATGAAGACATCAAAAAAGCTTACCGAAAATTAGCGCTAAAATATCACCCAGACAAAAAC 1832701 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTT-TC 299232 ||| |||| || || |||||||||||| || | | | || || | | | || || Sbjct 1832702 AAATCACCTGGGGCAGAGGAAAAGTTTAAAGAAGTTGCTGAAGCATA-CGAAGTGTTGTC 1832760 Query 299233 AGATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGGATTAAA 299283 ||| | ||| ||| | |||||||||||||| ||||| |||||||| Sbjct 1832761 CGATAAGAAGAAACGTGAAATGTATGATAAATTTGGTGAAGATGGATTAAA 1832811 >seq9485 Length=8729 Score = 87.8 bits (96), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| || || || | || || ||||||||| | || || || | || || || Sbjct 6546 GATTTTTCCTCGCCTAACGTAGCGAAAGAAATGCATGTCGGTCATTTACGTTCGACCATC 6605 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 |||||||| || ||||| || | | |||| | ||| || || | | || || Sbjct 6606 ATTGGTGATTCAATTTGTCGATTTTTGGAATATCTCGGACACGATGTGCTTCGTATTAAC 6665 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||| || || |||||||| |||||||||||||||||||| Sbjct 6666 CATATCGGAGACTGGGGAACGCAATTTGGTATGTTAATTGC 6706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267727903262108