Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq7526 93.3 6e-14 seq7901 91.5 2e-13 >seq7526 Length=6110091 Score = 93.3 bits (102), Expect = 6e-14 Identities = 230/345 (67%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 47963 AAGTT-TCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATT 48021 ||||| || || || | || || || ||||| || || || ||| | ||||| |||| Sbjct 5337020 AAGTTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCATTGCAGGCGAACATG 5337079 Query 48022 CCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACAC-CATA 48080 |||| | ||| |||||||| | || ||||||||||| || | | ||| |||| | || Sbjct 5337080 TCGTACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACA-TCTTGGCACACGCGTA 5337138 Query 48081 AGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATA 48140 || || || |||||||| || || | || | || || || || |||||| || || Sbjct 5337139 CGGTGAGCGGGGATAGAACGGGGTCTTTTCGTTTTGGGGCGTTTCCGCCACCTTGCCGTA 5337198 Query 48141 AAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGAC 48200 || || || ||||| || |||| || ||| | ||| | | | | ||||| Sbjct 5337199 CAGCTCGGACGTCGATGCCTGGTAGAAGCGGACCGTCCGCTCCTGCCCTACCGTACGGAT 5337258 Query 48201 TGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTC 48260 || || |||| | || || || | ||||| || | || |||||| || || Sbjct 5337259 GGCATCGAGCAGCCGGAGCGTACCGACCGCATCCACCTCCGCCGTGTACTCGCTCAGATC 5337318 Query 48261 AAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC 48305 ||||||| ||| || || ||||| || | ||||| || || || Sbjct 5337319 GAACGAAATCTTCACGTGGCTCTGGGCGGCCAGATTGTATATTTC 5337363 >seq7901 Length=80373 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| || |||| |||||||| ||| ||| ||||||||||||| ||||| |||||| Sbjct 38506 TGGAGGATGACGGGATCGAACCGACGACCCCCTGCTTGCAAAGCAGGTGCTCTCCCAACT 38447 Query 53801 GAGCTAATTCCCCAA-----TCGGGGTGGCAGGGATCGAACCTGCGACCC 53845 |||||||| |||||| | || ||| ||| |||||||| |||||| Sbjct 38446 GAGCTAATCCCCCAAACTGGTGGGTCTGGTAGGACTCGAACCTACGACCC 38397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665406879167720