Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq92 208 2e-49 seq7904 170 5e-38 >seq92 Length=1234 Score = 208 bits (230), Expect = 2e-49 Identities = 329/467 (70%), Gaps = 6/467 (1%) Strand=Plus/Plus Query 39887 ACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGAC 39946 |||| | | ||| |||| ||| ||||| || || ||| | || | ||||| | | Sbjct 85 ACGGCTGTGCCAATATCGGTAACTGCTACGGTGGACCTCAAAGAGTTGGCATAACGCTTT 144 Query 39947 CATAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATC 40006 | |||||| |||| || | ||| | ||||| ||| |||||| ||||| |||||| Sbjct 145 AACGGGATAAAGCGCGCTCAATTTGTTAACTATCGCGAATTGTTCAACGAGTCCGACATC 204 Query 40007 AAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTC 40066 |||||||||||||||||||||| || || || |||||||||| ||||||| |||| Sbjct 205 AAGAGCGCGGTAGCCTTTTTTAGAATATCGTTTTCCATTTCAAGACGTTGTATTCTTTTT 264 Query 40067 CTGAGCTCACGGATTTCAATTTGTTCCGGGGT-AATGGGGGAGGCTTTTGGTGTTTTGCC 40125 | | ||||| | ||| | || || || || ||||| | | || | |||||| Sbjct 265 TTCATTTCACGTAGTTCGTTCTGCTCGGGTGTCAATGGCAG-CCCAGCAGGCGCTTTGCC 323 Query 40126 CTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCAT 40185 ||||| ||| ||| || | || ||||| | |||| | |||||| || | ||| Sbjct 324 TTGACGTTCAAGACGGAGCTTGTTCACCCAGCGAGTCAAAGCAGAAAGGATGACGTTCAT 383 Query 40186 AGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCG 40245 || || || || ||| | | ||||||| ||||||||||||||| | || | ||| | Sbjct 384 CGCCTTTGCTGCCTCTACAAAGGTGTATTGCTGGTCAACAACCAGCTTGGCTGCTTCAAG 443 Query 40246 TTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTT-CTGAGGTG 40304 |||||| ||||| | |||| ||| ||| | | ||||||| ||| ||||| | Sbjct 444 TTTAAATTCTGCTGTGAAAT---GTTTACCCATCGTATCACCTGTAACGTTATTGAGGAG 500 Query 40305 AGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAA 40351 || |||||||||||| ||||||||||||||||| | ||||| ||| Sbjct 501 AGGATATCACCTCTGGTCAGGTGGCCAAATTCATTAAACCACTACAA 547 >seq7904 Length=1064 Score = 170 bits (188), Expect = 5e-38 Identities = 231/321 (72%), Gaps = 1/321 (0%) Strand=Plus/Minus Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160 || |||||||||| || | ||||||||| ||||| | || | | | ||| ||| Sbjct 320 TGTAGTGGTCAACTAATATTGGCCACCGCATTAGACTGTTCATGGAACAGCCGTTCTGAT 261 Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCACG 39220 || ||||| | ||| || ||||| || || ||||| ||| |||||||||| || ||| Sbjct 260 TCATTTGGCGTTAAGCCGCCGTTGTACCAATGGGGTCTCAGTTCACTGTAATACCCTACG 201 Query 39221 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 39280 |||||| || || || | |||||| | | |||| |||||| || | | Sbjct 200 ATATAGCGGGTAATCGCATTTTTAGCCTCGATAACGCTTTGATAACCCCTGGTGGGGAAC 141 Query 39281 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 39340 |||||| | |||| ||||||||||| |||||||| ||||| |||||||| ||||| ||| Sbjct 140 CATTCGGTTTTCAAGCTCCTGAAGAACCGTTCCATCGGGCTATTATCCCAACAGTTACCG 81 Query 39341 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCTGCT 39400 ||||| ||||||||||| | ||||| | ||||||| ||| ||| | | | ||| Sbjct 80 CGCCGACTCATACTCTGCTTAATCTGACAACGCCACAGCGCCTG-GCGGTATTTACGGCT 22 Query 39401 CGTATAATGACTGCCCTGATC 39421 ||||| || || |||||||| Sbjct 21 GGTATAGTGGCTTCCCTGATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132581833570274