Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7540 141 1e-27 seq7526 127 2e-23 seq7518 123 3e-22 seq7524 120 4e-21 seq7531 118 1e-20 seq7552 109 7e-18 seq7517 109 7e-18 >seq7540 Length=5191166 Score = 141 bits (156), Expect = 1e-27 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| | | | ||| ||||| || |||||||||||||| | || Sbjct 3197116 GCTTGGCCAGCTCGCCGGGGAGCAACAGTCGCACCGCCGTCTGGATCTCGCGGGACGTGA 3197175 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| || || | |||| || |||| | Sbjct 3197176 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCTTCCGCCGCGATCCGCTCGAAGA 3197235 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| ||||| |||| ||| ||||| ||| |||| Sbjct 3197236 TGTCGTTCACGAAGCTGTTCATGATGCTCATCGCCTTGGAGGAAATGCCGGTGTCCGGGT 3197295 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||||||||| Sbjct 3197296 GCACCTGCTTCAGCACCTTGTAGATG 3197321 >seq7526 Length=6110091 Score = 127 bits (140), Expect = 2e-23 Identities = 161/221 (73%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||||| ||||| |||| ||| || ||||| ||||| |||||| Sbjct 4673157 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCCACGCTTC 4673216 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||| ||| ||| || || ||| ||||| ||||| || || || || Sbjct 4673217 TTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGATACCCTCAACCGCAGCGAAT 4673276 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGCC 869356 | | || ||||||| ||||| | | ||| |||| | |||||| |||| |||| Sbjct 4673277 GCCACGACCCGCTCGCCAAAGTT------GGCCTTCTTGCTCGAGATCCAGTTCAGCGCC 4673330 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 ||||| ||||| | |||| |||||| ||| |||||||| Sbjct 4673331 CAGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 4673371 Score = 100 bits (110), Expect = 3e-15 Identities = 159/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 868789 CTTTTCGCATCCGAGCGACGCG-AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACA 868847 ||| ||||| || ||| || | |||| || ||||| |||||||| |||||||| ||| Sbjct 4672940 CTTCTCGCAGCCCAGCT-CGAGCAGCAAACGATCGGCCACAAACTCAATGTACTGCGACA 4672998 Query 868848 TGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCT 868907 | || | ||||||||| | | |||||||||| | || ||| ||||| | || Sbjct 4672999 TCAGATCACAGTTCATGCCCAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCT 4673058 Query 868908 CGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACG---TCGGCCGAGGGCTTGTTGA 868964 ||||| ||| || ||| |||||||| | | |||| || ||| ||||| | | Sbjct 4673059 CGATCAGGACCGCATCGCGGATGATCTCCGT---CACGCGCTCCTTCGACGGCTTCTGCA 4673115 Query 868965 CGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCAACCCT 869008 | || | || | | ||||||||||||||||||||||| |||| Sbjct 4673116 CCAGATACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCT 4673159 >seq7518 Length=5722304 Score = 123 bits (136), Expect = 3e-22 Identities = 212/297 (71%), Gaps = 17/297 (6%) Strand=Plus/Minus Query 733017 GTGGTGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGATC-GTGACGCGCGCCAT 733075 ||| || |||||| |||| |||| ||| ||| | ||||||| ||| |||| | | Sbjct 4512740 GTGATGCTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATCCGTGT-GCGCTCGGT 4512682 Query 733076 GCGCCAGCCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGG 733134 ||| | |||| || | |||||||| | ||||||||||||| || || || || ||| Sbjct 4512681 GCGT-ATCCCGCAGATCGGCGACAAGTTTGCGTCGCGCCACGGACAGAAAGGTAC-GTGC 4512624 Query 733135 G-----CAGCGTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCC 733189 | ||| | | ||| ||||||||||| | || | | ||| ||| ||||| Sbjct 4512623 GGTATACAGTAT---CGCCAG-GAGGACATGCCGT--TCAC-GTGCGAGGGCATTACGCC 4512571 Query 733190 CGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGA 733249 |||||| | || |||||||||||||||||||| || |||||||| || | || |||| Sbjct 4512570 GGACATCATCATTAACCCGCACGCCATCCCGTCCCGTATGACCATTGGGCATTTGATCGA 4512511 Query 733250 GGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 | | ||| ||||||| ||| || | ||||| | |||||||||| |||||| || Sbjct 4512510 GTGCATCCAGGGCAAGCTGGGCTCGAACAAGGGCGAAATCGGCGACGCCACGCCGTT 4512454 >seq7524 Length=14321806 Score = 120 bits (132), Expect = 4e-21 Identities = 209/298 (70%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGG 1573953 |||||| || || ||| || || |||| |||| || ||||| || |||| || || Sbjct 11824079 GGGTCCCCCGGGTGTGGGTAAAACGACGACCATCCTCTGCCTGGCACGCATCCTGCTCGG 11824020 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 || | | ||| ||||||||| || || || ||||| || | |||||||| |||| | Sbjct 11824019 GCCCAACTTCCG-CGAGGCCGTACTTGAGCTGAACGCTTCCAATGAGCGCGGTATCGATG 11823961 Query 1574014 TCGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGG-ATCGACCTGCCGCCCGGACG 1574071 | || |||| | ||||| || | || ||| | || ||||| | ||| || Sbjct 11823960 TGGTACGCAGCAAGATCAAAATGTTTGCGCAACAGAAGGTAACG--CTGCCCCGCGGCCG 11823903 Query 1574072 CCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCT 1574131 |||||| | | ||||| ||||| || ||| || | ||| || |||||||||||| || Sbjct 11823902 GCACAAGATTGTAATCCTGGACGAAGCGGACAGCATGACGGAGGGGGCCCAGCAGGCGCT 11823843 Query 1574132 GCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACG 1574189 |||| || ||||||| | | |||||||||||||||||| || || || || ||| Sbjct 11823842 GCGGCGAACGATGGAAATCTATAGCAACACGACGCGCTTTGCGCTAGCCTGTAATACG 11823785 >seq7531 Length=2383904 Score = 118 bits (130), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 ||||||||||| |||||| ||||||| || || | || || ||| |||| Sbjct 715153 AAGCGCACCGATGACATCAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGCACC 715212 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| ||||||| ||||| ||||| || ||||||||| ||||| || | Sbjct 715213 CTGTTCGAGCTGATCCTGGCCGCGAACTATCTGGACATCAAGGGGCTGCTGGACGTGACC 715272 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| | ||||| ||||||||||||||||| | || || ||||| ||||| || || Sbjct 715273 TGCAAAACGGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACGTTC 715332 Query 1592288 AACATCAAGTACG 1592300 ||||||||| ||| Sbjct 715333 AACATCAAGAACG 715345 >seq7552 Length=2500597 Score = 109 bits (120), Expect = 7e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || ||||| | ||| ||||||| ||||| ||||| || ||||| || Sbjct 1136287 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGA 1136346 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| || || | | ||| | || ||||| | |||| || | || Sbjct 1136347 AATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCC 1136406 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||||||| || || || || ||||| || |||||||||||||||||||| Sbjct 1136407 GATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTC 1136466 Query 1630245 GAT 1630247 || Sbjct 1136467 AAT 1136469 >seq7517 Length=11427604 Score = 109 bits (120), Expect = 7e-18 Identities = 339/511 (66%), Gaps = 23/511 (5%) Strand=Plus/Minus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 ||| |||| || ||| | |||| |||| ||||||||||| ||| || ||||| Sbjct 8048330 AGGTCGATTTTTGAGTCCTCCTCACTGGACGACATCTTGCCGC---CGGCCAGTCCCGGG 8048274 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGT-CGCG 1852158 | | ||| || | || || | ||||| || || || |||||||| | | || Sbjct 8048273 ATCATCGGATTCATAAGATGAATACGCTTGGCGTAACCCAGCTGCGGCAGGTATTTCTCG 8048214 Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 || |||| || || |||||||| || ||| || ||||||||||| || | || | Sbjct 8048213 -GCGAAGGTGAAAATTTTGCGCTGATCCACCCCACCGAACTGGGCGTCCACCTTCAGATA 8048155 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTC 1852278 || |||||| || ||||||| | |||||| || | | || ||||| | | || Sbjct 8048154 CTCCTCGTCCAGCGCCTGCAGGCCCGGGTACAGGATGCCCGACATCAGCGGAT---GCTC 8048098 Query 1852279 CA---TCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGCCGGTGCG-CACGTGCGC 1852332 || ||| ||||||| || | |||| || ||| ||||| |||| |||| || Sbjct 8048097 CACCTGCTTCACCACCTCCGCTCCCGCCTTCTTGGCGTCGTGC---TGCGTCACGACCGA 8048041 Query 1852333 CGCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGC 1852390 | | ||||| | || |||| ||| | || || || ||| || || ||||||| | Sbjct 8048040 GGACAACCGGTACACATCCAGCGTGTA--CTCCTTCGACAGCTGATAGTCCGTGCCGCAC 8047983 Query 1852391 ACAAACTCGAGTCCGCCCAGCGGCACGCCGA-TGTGCTGGAGCATGGCCTTGATGGCAAA 1852449 || |||| || | |||||||||| |||| | | | ||||| |||||||| | Sbjct 8047982 ACGAACTTCAGCTTGTCCAGCGGCACTCCGAGCGAGGT-AAGCATCGCCTTGATAACCGC 8047924 Query 1852450 CTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTG 1852509 |||||| | | || | | || ||| |||||||| ||| |||||| || | Sbjct 8047923 CTCGTAGTACTTGGTGCGTTCCTTGAGCAGCGACCACGGCGCCTTCATGTTGTCCAGATA 8047864 Query 1852510 GGCGTGCACGTCGGCAAAGAGGATCTTGACC 1852540 |||||||| || ||||| |||||| | ||| Sbjct 8047863 GGCGTGCAGATCTGCAAACAGGATCGTTACC 8047833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106275797470157