Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7540 192 9e-43 seq7524 132 8e-25 seq10210 123 4e-22 seq7531 111 2e-18 seq7526 111 2e-18 seq7518 111 2e-18 seq7552 107 3e-17 seq7517 102 1e-15 >seq7540 Length=5191166 Score = 192 bits (212), Expect = 9e-43 Identities = 187/241 (78%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| | | Sbjct 3197077 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGGA 3197136 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || |||||||||||||||| ||| ||| ||||||||| | Sbjct 3197137 GCAACAGTCGCACCGCCGTCTGGATCTCGCGGGACGTGATGGTGGAGCGCTTGTTGTAGT 3197196 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| || || | |||| || |||| |||||||| || || ||||| Sbjct 3197197 GCGCCAGGCGGGACGCTTCCGCCGCGATCCGCTCGAAGATGTCGTTCACGAAGCTGTTCA 3197256 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| ||| ||||| ||| |||||||||||||| |||||||||| Sbjct 3197257 TGATGCTCATCGCCTTGGAGGAAATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 3197316 Query 1485710 A 1485710 | Sbjct 3197317 A 3197317 >seq7524 Length=14321806 Score = 132 bits (146), Expect = 8e-25 Identities = 245/355 (69%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 2019047 GGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCT-CTTGGGCGCGGCCGCCGACG 2019105 ||| || || |||| |||| |||||||| ||| | || || |||| | | ||| || Sbjct 11824064 GGGTAAAACGACGACCATCCTCTGCCTGGCACGCATCCTGCTCGGGCCCAACTTCCG-CG 11824006 Query 2019106 AGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCA 2019165 ||||||| || || || || || || | |||||||| | || || || || || | | Sbjct 11824005 AGGCCGTACTTGAGCTGAACGCTTCCAATGAGCGCGGTATCGATGTGGTACGCAGCAAGA 11823946 Query 2019166 TCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCAT 2019223 |||| | ||| | || | | || ||||| | |||||| |||||| | | || Sbjct 11823945 TCAAAATGTTTGCGCAACAGAAGGTAACG--CTGCCCCGCGGCCGGCACAAGATTGTAAT 11823888 Query 2019224 CCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGA 2019283 ||| || || || ||| || | ||| || |||||||||||| || || || ||||| Sbjct 11823887 CCTGGACGAAGCGGACAGCATGACGGAGGGGGCCCAGCAGGCGCTGCGGCGAACGATGGA 11823828 Query 2019284 AAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGA 2019343 || || | |||||||||||| |||||||| ||||| || ||| | | ||||||| Sbjct 11823827 AATCTATAGCAACACGACGCGCTTTGCGCTAGCCTGTAATACGAGCGAAAAGATCATCGA 11823768 Query 2019344 AGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAG 2019398 | | ||||| ||| || || || ||||||| || ||| |||| |||||| Sbjct 11823767 ACCGATCCAGTCCCGGTGTGCGATGCTGCGCTTCTCGAAGCTCTCCGATGCCCAG 11823713 >seq10210 Length=6988 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| ||||| || || || |||||||||||| |||| || || || ||| Sbjct 720 TGTACTTTGTGACAGCCTTCGTTCCTTCGGAGACGGCGTGCTTGGCAAGCTCACCAGGCA 779 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || || ||||| ||||| ||||||| |||||| |||||||| | Sbjct 780 GCAGCAGACGAACAGCGGTTTGGATTTCGCGGGACGTGATCGTCGAACGCTTGTTGTAGT 839 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| ||||| | | ||||| |||| || |||||||| || ||||| Sbjct 840 GCGCCAAGCGGGATGCCTCAGCAGCAATGCGTTCGAAGATATCGTTGACGAAACTGTTCA 899 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| || ||||| || ||||| | ||| |||| Sbjct 900 TGATGCTCATGGCCTTCGAAGAGATGCCAGTATCCGGGTGGACTTGCTTCAACACTTTGT 959 Query 1485710 A 1485710 | Sbjct 960 A 960 >seq7531 Length=2383904 Score = 111 bits (122), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||| ||||| ||||||| | ||| |||| ||||| | Sbjct 715150 GAAAAGCGCACCGATGACATCAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGC 715209 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| || ||| ||||||| ||||| ||||| || ||||||||| || || || || Sbjct 715210 ACCCTGTTCGAGCTGATCCTGGCCGCGAACTATCTGGACATCAAGGGGCTGCTGGACGTG 715269 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| || ||||| ||| | ||||||||||| | || || || || ||||| || Sbjct 715270 ACCTGCAAAACGGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACG 715329 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||||||| ||| Sbjct 715330 TTCAACATCAAGAACG 715345 >seq7526 Length=6110091 Score = 111 bits (122), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| ||||| ||||| ||| ||| || ||||| ||||| |||||| Sbjct 4673157 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCCACGCTTC 4673216 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| || ||| || || ||| ||||| ||||| || || || || Sbjct 4673217 TTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGATACCCTCAACCGCAGCGAAT 4673276 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCC 794518 | |||| |||||| || ||||| |||| |||| | |||||| |||| ||||| Sbjct 4673277 GCCACGACCCGCTC-GCCAAAGT----TGGCCTTCTTGCTCGAGATCCAGTTCAGCGCCC 4673331 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 | || ||||| | |||| | |||| ||| |||||||| Sbjct 4673332 AGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 4673371 Score = 91.5 bits (100), Expect = 2e-12 Identities = 158/225 (70%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 793997 CTTCTCGCACCCGAGC--GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCAC 794054 ||||||||| || ||| || ||| ||| || ||||| || || ||||||||||| || Sbjct 4672940 CTTCTCGCAGCCCAGCTCGA-GCA-GCAAACGATCGGCCACAAACTCAATGTACTGCGAC 4672997 Query 794055 ATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTC 794114 || || | ||||||||| | | |||| ||||| | || | | ||||| | | Sbjct 4672998 ATCAGATCACAGTTCATGCCCAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGC 4673057 Query 794115 TCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG---TCGGACGACGGCTTGTCG 794171 |||||| ||| || ||| |||||||| | | |||| || ||||||||| | Sbjct 4673058 TCGATCAGGACCGCATCGCGGATGATCTCC---GTCACGCGCTCCTTCGACGGCTTCTGC 4673114 Query 794172 ACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 || || | || | | |||||||||||||||||| ||||| ||| Sbjct 4673115 ACCAGATACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCT 4673159 >seq7518 Length=5722304 Score = 111 bits (122), Expect = 2e-18 Identities = 240/351 (68%), Gaps = 15/351 (4%) Strand=Plus/Minus Query 653527 CAAGCGCGACAAGTCGACCATCCTGCGCACCAACGAGGCCGCCACGGTGCACCGCGTCGT 653586 |||||| ||| ||| || | |||||| | |||| ||| | || | | || | Sbjct 4512795 CAAGCGAGACGGGTCAACGTTTTTGCGCAACTCCGAGACCGGTATCGTCGATCAGGTGAT 4512736 Query 653587 GGTGACGCGCAACGGCGACGGCGCCAACGCGGTCAAGATCGTCACCCGCGCCATGCGCCA 653646 | |||||| |||| |||| ||| ||| ||||||| ||| | |||| | Sbjct 4512735 GCTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATCCGTGTGCGCTCGGTGCGT-A 4512677 Query 653647 GCCCG-AGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG----- 653700 |||| || | |||||||| | ||||||||||||| || || || || ||| | Sbjct 4512676 TCCCGCAGATCGGCGACAAGTTTGCGTCGCGCCACGGACAGAAAGGTAC-GTGCGGTATA 4512618 Query 653701 CAGCGTGCGCTCGACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACAT 653760 ||| | ||| | ||||| ||||||| || | | ||| |||| ||||| ||||| Sbjct 4512617 CAGTAT-CGCCAG---GAGGACATGCCGT--TCAC-GTGCGAGGGCATTACGCCGGACAT 4512565 Query 653761 CGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCT 653820 | |||| |||||||||||||||||||| || |||||||| || | |||| ||| | | Sbjct 4512564 CATCATTAACCCGCACGCCATCCCGTCCCGTATGACCATTGGGCATTTGATCGAGTGCAT 4512505 Query 653821 CCTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTT 653871 || ||||||| ||| || | ||||| | | ||||||| ||| ||||| Sbjct 4512504 CCAGGGCAAGCTGGGCTCGAACAAGGGCGAAATCGGCGACGCCACGCCGTT 4512454 >seq7552 Length=2500597 Score = 107 bits (118), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || || ||||| | ||| ||||||| ||||| ||||| || ||||| || Sbjct 1136287 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGA 1136346 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| || || | | ||| | ||| ||||| | |||| || | || Sbjct 1136347 AATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCC 1136406 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| ||||||| ||| || || || || |||| |||||||| |||||||||||||| Sbjct 1136407 GATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTC 1136466 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || || | |||| |||||| ||||| ||||| Sbjct 1136467 AATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGA 1136505 >seq7517 Length=11427604 Score = 102 bits (112), Expect = 1e-15 Identities = 335/509 (66%), Gaps = 19/509 (4%) Strand=Plus/Minus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 || || || || ||| | |||| |||| |||||||||| | || || ||||| Sbjct 8048330 AGGTCGATTTTTGAGTCCTCCTCACTGGACGACATCTTGCCGCC---GGCCAGTCCCGGG 8048274 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGT-CGCG 2411501 | || ||| || | || || || |||||| ||| |||||| |||||||| | | || Sbjct 8048273 ATCATCGGATTCATAAGATGAATACGCTTGGCGTAACCCAGCTGCGGCAGGTATTTCTCG 8048214 Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561 || |||| || || |||||||| || ||| || ||||||||||| || | || | Sbjct 8048213 -GCGAAGGTGAAAATTTTGCGCTGATCCACCCCACCGAACTGGGCGTCCACCTTCAGATA 8048155 Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTC 2411621 || |||||| || ||||||| | |||||| | || | | | |||| | | || Sbjct 8048154 CTCCTCGTCCAGCGCCTGCAGGCCCGGGTACAGGATGCCCGACATCAGCGGAT---GCTC 8048098 Query 2411622 CA---TCTTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGCCGACGGTCACGCGCGCC 2411676 || ||| ||||||| || | |||| || ||| ||||| | |||||| || Sbjct 8048097 CACCTGCTTCACCACCTCCGCTCCCGCCTTCTTGGCGTCGTGCTG--CGTCACGACCGAG 8048040 Query 2411677 GTCAGGCGCAAGAGGTCGAGCGTGTA-GGCGGCGCCATGCTGGTAATCGCTGCCGCGCAC 2411735 | || || | | || |||||||| | || || |||| || || |||||| ||| Sbjct 8048039 GACAACCGGTACACATCCAGCGTGTACTCCTTCGACA-GCTGATAGTCCGTGCCGCACAC 8047981 Query 2411736 AAATTCGAGACGATCCAGCGGGACGCC-AATGTGCTGGAGCATGGCCTTGATGGCAAACT 2411794 || | || |||||||| || || | | | | ||||| |||||||| | || Sbjct 8047980 GAACTTCAGCTTGTCCAGCGGCACTCCGAGCGAGGT-AAGCATCGCCTTGATAACCGCCT 8047922 Query 2411795 CGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGG 2411854 |||| | | || | || || || |||||||| ||| ||||| || | || Sbjct 8047921 CGTAGTACTTGGTGCGTTCCTTGAGCAGCGACCACGGCGCCTTCATGTTGTCCAGATAGG 8047862 Query 2411855 CGTGCACGTCGGCAAAGAGGATCCTCACC 2411883 |||||| || ||||| |||||| | ||| Sbjct 8047861 CGTGCAGATCTGCAAACAGGATCGTTACC 8047833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915127233243719