Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq236 116 5e-21 >seq236 Length=1144 Score = 116 bits (128), Expect = 5e-21 Identities = 256/378 (68%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 32875 TTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCG 32934 || ||||| || | |||| ||||| |||||||||||||| || ||| || ||||| Sbjct 1143 TTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGCA 1084 Query 32935 CCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAAT 32994 |||||||| || |||||||| |||||| |||||| || ||||| || | || |||| Sbjct 1083 CCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAAC 1024 Query 32995 GGGATAATACCAGTATGACGAACCTCGCCAGAACGAATTCTAG--AGCCTTCAGCACGAA 33052 || || || ||||| | | || ||| |||| || | | || | ||||| | Sbjct 1023 GGAATGCAGCCGGTATGGAAAGCTTCTCCACCGCGAA-TCGGGCTACCCAAC-GCACGGA 966 Query 33053 TAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGAACTAG 33112 | || | ||||| ||||| || || | | | | || | || || | || | Sbjct 965 TGCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCTTG 906 Query 33113 CGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACT 33172 ||| || ||||| ||| || |||||||| ||| ||| || || ||||| |||| Sbjct 905 AGGTGGCATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCTGAACT 846 Query 33173 GACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAGACTCAGCTTGCCAAG-- 33230 ||||||| || ||||| || |||| || || || || || ||| | ||| ||| Sbjct 845 GACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGAGAAATTTTG--AAGGT 788 Query 33231 AGAAGTGACGTCATAAAA 33248 |||| || ||||||| || Sbjct 787 AGAAATGGCGTCATAGAA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710197787828560