Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq236 138 1e-27 >seq236 Length=1144 Score = 138 bits (152), Expect = 1e-27 Identities = 265/391 (68%), Gaps = 10/391 (3%) Strand=Plus/Minus Query 139778 TTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGC 139837 |||||| || |||| | |||| ||||||| ||||| || || ||| ||||||| || || Sbjct 1144 TTTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGC 1085 Query 139838 ACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAA 139897 ||||||||| || || || ||||| |||||||| || || |||||||| || || |||| Sbjct 1084 ACCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAA 1025 Query 139898 AGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTTCAGCTCGGAT 139957 ||||| ||| || || |||| || | ||| || || ||||| Sbjct 1024 CGGAATGCAGCCGGTATGGAAAGCTTCTCCACCGCGAATCGGGCTACCCAACGCACGGAT 965 Query 139958 TCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAATCGATGCTGC 140017 || || |||||||||||||| || || |||| |||| ||| || ||||| | || Sbjct 964 GCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCTTGA 905 Query 140018 TGAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACACGAACTGAATTG 140077 | | | || || | || |||| || | ||||| | ||||| || ||||| || Sbjct 904 GGTGGCATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCTGAACTG 845 Query 140078 ACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAACGCGCTTTTG--- 140134 ||| | || ||||| | || | ||| || || || |||| |||| ||||| Sbjct 844 ACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGAGAAA-----TTTTGAAG 790 Query 140135 --AGATACTGCATCATAGAAACGAATAACAT 140163 ||| | || ||||||||||| | |||| Sbjct 789 GTAGAAATGGCGTCATAGAAACGCTTTACAT 759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535052824610160