Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_024122.1 Length=162910 Score E Sequences producing significant alignments: (Bits) Value seq236 118 1e-21 >seq236 Length=1144 Score = 118 bits (130), Expect = 1e-21 Identities = 200/286 (70%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 9396 TCTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGT 9455 ||| || || || || ||||| ||||| || || || ||||| ||||||||||| ||||| Sbjct 802 TCTGCCTACGCCAATCATGTCTGGCGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGT 861 Query 9456 ATTAATCAAAACTGGTGATACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGA 9515 | ||| || |||||||| |||| || ||||||||||| | | ||| ||| | Sbjct 862 GCTGATCGAATGTGGTGATAGCCTGGATTCGATTAATGCCACCTCAAGCGCCATTGTGAA 921 Query 9516 TTATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATCGGTAG 9575 || |||||| ||||||| || ||||| || | | || || |||| | ||||| Sbjct 922 ATACGTTTCCCAACGTGCGGGGATCGGCATCAACGCGGGCCGCATCCGTGCGTTGGGTAG 981 Query 9576 CCCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCCATTCATCAAGTATTT-- 9632 ||| || || || ||| ||||||| || ||| |||| ||| |||| |||| Sbjct 982 CCCGATTCGCGGTGGAGAAGCTTTCCATACCGG-CTGCATTCCGTTCTACAAGCATTTCC 1040 Query 9633 -GACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGG 9677 ||| ||| | || || |||||||| ||||| | |||||||| Sbjct 1041 AGAC---CGCCGTAAAATCCTGCTCTCAGGGCGGCGTGCGTGGTGG 1083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521115457789200