Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq236 111 2e-19 >seq236 Length=1144 Score = 111 bits (122), Expect = 2e-19 Identities = 256/382 (67%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 27212 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 27270 ||||| ||||| ||| ||||||| | |||| |||| ||||||| ||||| ||| | || Sbjct 767 CGTTTCTATGACGCCATTTCTAC-CTTCAAAATTTCTCTGCCTACGCCAATCATGTCTGG 825 Query 27271 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 27330 | ||||| ||||| || |||||| ||||| | || ||| |||||| | Sbjct 826 CGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTGCTGATCGAATGTGGTGATAGCCT 885 Query 27331 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 27390 | || ||||| || ||| | ||| | |||| |||| |||| || || || Sbjct 886 GGATTCGATTAATGCCACCTCAAGCGCCATTGTGAAATACGTTTCCCAACGTGCGGGGAT 945 Query 27391 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGAT---CGGTATGGGTGAAGT 27447 || ||||||| || | ||||| ||| ||| |||| || |||| Sbjct 946 CGGCATCAACGCGGGCCGCATCCGTGCGTTGGGTAGCCCGATTCGCGGT---GGAGAAGC 1002 Query 27448 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 27507 | ||||| || ||||| |||| || |||||||| || || |||||||| || || Sbjct 1003 TTTCCATACCGGCTGCATTCCGTTCTACAAGCATTTCCAGACCGCCGTAAAATCCTGCTC 1062 Query 27508 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 27567 ||| || || | |||||||||||||| || || || ||||||||||| | ||||| Sbjct 1063 TCAGGGCGGCGTGCGTGGTGGTGCTGCCACGTTGTTCTACCCGATGTGGCATCTGGAAGT 1122 Query 27568 AGAGAACCTATTAGTTCTGAAA 27589 || | ||| | || |||||| Sbjct 1123 CGAAAGCCTGCTGGTGCTGAAA 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541074432589280