Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq7521 102 5e-17
seq7535 91.5 1e-13
seq7517 89.7 3e-13
>seq7521
Length=12184106
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | || || | ||||| ||| || || ||| || || |||||||| ||||
Sbjct 8321346 CACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 8321287
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| | || |||| || || ||||| || |||| ||||||||||||| |||
Sbjct 8321286 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCG 8321227
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || ||| ||| |||| || | || || | ||
Sbjct 8321226 GGATTCCTTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCGATCGTATCCGAGGGCTCG 8321168
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| || || || ||||| || | ||||| || |||||||||||
Sbjct 8321167 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 8321118
Score = 82.4 bits (90), Expect = 5e-11
Identities = 133/189 (70%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621
|| || |||||||| |||||||| ||||| | || |||| || || ||||| || |||
Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217
Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681
| ||||||||||||| | || | ||||| ||||| || || || | |||| ||
Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT-TGCCTTCACATTCTC 9381276
Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740
| ||||| | || || |||| ||||| || || || || | ||||| || ||
Sbjct 9381277 GATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAA 9381336
Query 33741 GATCTGCAT 33749
||||||||
Sbjct 9381337 AATCTGCAT 9381345
>seq7535
Length=3646130
Score = 91.5 bits (100), Expect = 1e-13
Identities = 167/241 (69%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || ||||| | || ||| | |||| ||| ||||| ||| || || |||
Sbjct 875796 AAAATCTGCATGCCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATG 875855
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
|| || || || || ||||| | || |||| || |||||||| || |||| |||||||
Sbjct 875856 TTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGC 875915
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|||||| |||| | || || ||||| || ||| ||| |||| || | || ||
Sbjct 875916 TGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCAATCGTATC 875974
Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || || || | ||||| || || || || | ||||| || || ||||||||
Sbjct 875975 CGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034
Query 33750 A 33750
|
Sbjct 876035 A 876035
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||| ||| || ||| ||| || || ||||| || || ||
Sbjct 876035 ACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGA 876094
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || ||||| || || |||| ||||||||||||| ||||
Sbjct 876095 CAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGG 876154
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| || ||| ||| |||| || | || || || || |
Sbjct 876155 GATTCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCAATCGTATCCGATGGCTCAA 876213
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | ||||| || || |||||||||
Sbjct 876214 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 876263
>seq7517
Length=11427604
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| | ||||| || | || ||| || || |||||||| |||||
Sbjct 2898510 CCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898451
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || ||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 2898450 AGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 2898391
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || ||| || | || | ||||| | || ||
Sbjct 2898390 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATCGTGTCCGACGGCTCGAC 2898332
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||| || || || || | ||| || || |||||||||||
Sbjct 2898331 CTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328661852032320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |