Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq7540 149 9e-30
seq7552 118 2e-20
seq7526 107 3e-17
seq10210 100 4e-15
seq7518 89.7 7e-12
>seq7540
Length=5191166
Score = 149 bits (164), Expect = 9e-30
Identities = 173/232 (75%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||||| |||||||||||||| |||| ||| ||| |||| |
Sbjct 3197320 ATCTACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATT-TCCTCCAAGGCG 3197267
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || || |||||||| |||| || |||| | || ||
Sbjct 3197266 ATGAGCATCATGAACAGCTTCGTGAACGACATCTTCGAGCGGATCGCGGCGGAAGCGTCC 3197207
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|||||||||| || |||||||||| ||| ||| | |||||||||||||| || |||
Sbjct 3197206 CGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCCCGCGAGATCCAGACGGCGGTG 3197147
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||| | | | |||||| ||||||| ||||||||| |||||||||||||
Sbjct 3197146 CGACTGTTGCTCCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3197095
>seq7552
Length=2500597
Score = 118 bits (130), Expect = 2e-20
Identities = 169/238 (71%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 259945 CACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGA 260004
||| | ||| || ||| |||||| ||||| |||||| |||| | ||| || ||
Sbjct 1136524 CACTCAGCGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGA 1136465
Query 260005 GGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064
||||||||| |||||||| |||||||| || || || || ||| ||||||| ||||||||
Sbjct 1136464 GGGCATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGG 1136405
Query 260065 TTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTC 260124
| || ||| | ||||| ||| | ||| | | || || ||||| ||
Sbjct 1136404 ACTGAACGTGCACTGTATCCGCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATTTC 1136345
Query 260125 CAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
||||| || ||||| ||||| ||||| | ||| | ||||| || |||||||| |||
Sbjct 1136344 GAACGGTCTGGTGCCGATGCTGCGCGTCTACAACAATACGGCACGGTACGTCGATCAG 1136287
>seq7526
Length=6110091
Score = 107 bits (118), Expect = 3e-17
Identities = 187/268 (70%), Gaps = 3/268 (1%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855
|||| || || ||||||||||| | || ||||| || || | || | | |||
Sbjct 4673770 AGGCGGAAGCTTCCTTTTGGACGGTGGAAGAGGTTGATCTGTCCAAGGATATGAAGGACT 4673711
Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914
||| |||||||| ||| ||| ||||| ||||| ||||| || ||||| ||| ||
Sbjct 4673710 GGGAGTCGCTGAAAC-CGAGCGAACGCCACTTCATTTCCCACGTGCTGGCCTTCTTT-GC 4673653
Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974
||| ||| || |||||| |||||| |||| | ||||| | | ||||| || |
Sbjct 4673652 CGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGT 4673593
Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034
| ||||| || | || ||||| |||||||| || || ||||| | ||| || |
Sbjct 4673592 TACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGAT 4673533
Query 1456035 CTACTCGCTCCTGATCGACACCTACGTC 1456062
|||||||| ||||||||||| ||| ||
Sbjct 4673532 GTACTCGCTGCTGATCGACACGTACATC 4673505
>seq10210
Length=6988
Score = 100 bits (110), Expect = 4e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||| ||| | ||||| || ||||| || ||| |||| || ||| ||
Sbjct 963 ATCTACAAAGTGTTGAAGCAAGTCCACCCGGATAC---TGG--CATC-TCTTCGAAGGCC 910
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || |||||||| || |||| ||||| | | |||||
Sbjct 909 ATGAGCATCATGAACAGTTTCGTCAACGATATCTTCGAACGCATTGCTGCTGAGGCATCC 850
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
||| |||||| || ||||||||| |||||| | ||||| ||||| ||||| ||
Sbjct 849 CGCTTGGCGCACTACAACAAGCGTTCGACGATCACGTCCCGCGAAATCCAAACCGCTGTT 790
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| ||| | ||| || || || |||| ||||||||||||||| || ||
Sbjct 789 CGTCTGCTGCTGCCTGGTGAGCTTGCCAAGCACGCCGTCTCCGAAGGAAC 740
>seq7518
Length=5722304
Score = 89.7 bits (98), Expect = 7e-12
Identities = 162/230 (70%), Gaps = 14/230 (6%)
Strand=Plus/Plus
Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579
|| |||||| ||||||| | | ||||| | || ||| ||||||| ||| | |||
Sbjct 4512454 AACGGCGTGGCGTCGCCGATTTCGCCCTTGTTCGAGCCCAGCTTGCCCTGGATGCACTCG 4512513
Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639
|||| | || |||||||| || |||||||||||||||||||| || | ||||| |||
Sbjct 4512514 ATCAAATGCCCAATGGTCATACGGGACGGGATGGCGTGCGGGTTAATGATGATGTCCGGC 4512573
Query 1600640 GTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCGGTGGAGCGCACGCTG-----CCCA 1600694
|| || ||| | | || | ||||||||||| ||| | | ||| | ||
Sbjct 4512574 GTAATGCCCTCGC-ACGTGA--ACGGCATGTCCTC-CTGGCG---ATACTGTATACCGCA 4512626
Query 1600695 CGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCT-CGGG 1600743
| || || || || ||||||||||||| | |||||||| | || ||||
Sbjct 4512627 C-GTACCTTTCTGTCCGTGGCGCGACGCAAACTTGTCGCCGATCTGCGGG 4512675
Score = 87.8 bits (96), Expect = 3e-11
Identities = 207/303 (68%), Gaps = 15/303 (5%)
Strand=Plus/Plus
Query 1601179 GTCCTCCTGGTTGTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGG 1601235
|||||||||||||||| | || || || ||| |||||| || || || |||
Sbjct 4513083 GTCCTCCTGGTTGTAGCCCGTGTAGCACAGGATAGCCACGATCGAGTTGATACCGGCCGG 4513142
Query 1601236 GAGGCGCGTGGCGCCGATGACGTCCTCCATGG--CG-GTCTGCACCAGCGGCACCTGCGG 1601292
|| | | || |||| || | |||||| | || ||| ||| |||||| | |||
Sbjct 4513143 CAG-CTCACGGAACCGAAGA--TACTCCATCGAACGCGTCGTCACGAGCGGCTTCATCGG 4513199
Query 1601293 GTAGCACAGGGCGTGCGACACCGTGTCGATG-GCA--TGGTCGGCGTTGAGCGACACGAC 1601349
|||| | || |||||| | |||||| ||| ||| ||| | ||| |||| |
Sbjct 4513200 GTAGTAAAGCACGTGCGCGAGCGTGTCCATGCGCACGTGGAAGTTCGTGATGTACACACC 4513259
Query 1601350 GGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTT 1601409
| | || |||||| ||||| || | |||||| |||| ||||| ||||||||| |
Sbjct 4513260 --CATCGC-CTGCTTACCCATAGCGCTTTGGTAGGTGTTACGCGGACTCTGGTTGTGATC 4513316
Query 1601410 GGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTG 1601469
| |||||||||||||| |||||| |||||| || | | ||| |||| ||| |||
Sbjct 4513317 CGGGAACGGGATGATGGAAGCGCAGACGCCCAAAATCATCGCCGGATGGATCTCACAGTG 4513376
Query 1601470 CGT 1601472
|||
Sbjct 4513377 CGT 4513379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176796430212402
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |