Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7540 149 9e-30 seq7552 118 2e-20 seq7526 107 3e-17 seq10210 100 4e-15 seq7518 89.7 7e-12 >seq7540 Length=5191166 Score = 149 bits (164), Expect = 9e-30 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||||||||| |||| ||| ||| |||| | Sbjct 3197320 ATCTACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATT-TCCTCCAAGGCG 3197267 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| || |||| | || || Sbjct 3197266 ATGAGCATCATGAACAGCTTCGTGAACGACATCTTCGAGCGGATCGCGGCGGAAGCGTCC 3197207 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| ||| ||| | |||||||||||||| || ||| Sbjct 3197206 CGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCCCGCGAGATCCAGACGGCGGTG 3197147 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | | | |||||| ||||||| ||||||||| ||||||||||||| Sbjct 3197146 CGACTGTTGCTCCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3197095 >seq7552 Length=2500597 Score = 118 bits (130), Expect = 2e-20 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 259945 CACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGA 260004 ||| | ||| || ||| |||||| ||||| |||||| |||| | ||| || || Sbjct 1136524 CACTCAGCGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGA 1136465 Query 260005 GGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 ||||||||| |||||||| |||||||| || || || || ||| ||||||| |||||||| Sbjct 1136464 GGGCATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGG 1136405 Query 260065 TTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTC 260124 | || ||| | ||||| ||| | ||| | | || || ||||| || Sbjct 1136404 ACTGAACGTGCACTGTATCCGCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATTTC 1136345 Query 260125 CAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||| || ||||| ||||| ||||| | ||| | ||||| || |||||||| ||| Sbjct 1136344 GAACGGTCTGGTGCCGATGCTGCGCGTCTACAACAATACGGCACGGTACGTCGATCAG 1136287 >seq7526 Length=6110091 Score = 107 bits (118), Expect = 3e-17 Identities = 187/268 (70%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || ||||||||||| | || ||||| || || | || | | ||| Sbjct 4673770 AGGCGGAAGCTTCCTTTTGGACGGTGGAAGAGGTTGATCTGTCCAAGGATATGAAGGACT 4673711 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| |||||||| ||| ||| ||||| ||||| ||||| || ||||| ||| || Sbjct 4673710 GGGAGTCGCTGAAAC-CGAGCGAACGCCACTTCATTTCCCACGTGCTGGCCTTCTTT-GC 4673653 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||| || |||||| |||||| |||| | ||||| | | ||||| || | Sbjct 4673652 CGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGT 4673593 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | ||||| || | || ||||| |||||||| || || ||||| | ||| || | Sbjct 4673592 TACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGAT 4673533 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTC 1456062 |||||||| ||||||||||| ||| || Sbjct 4673532 GTACTCGCTGCTGATCGACACGTACATC 4673505 >seq10210 Length=6988 Score = 100 bits (110), Expect = 4e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||| | ||||| || ||||| || ||| |||| || ||| || Sbjct 963 ATCTACAAAGTGTTGAAGCAAGTCCACCCGGATAC---TGG--CATC-TCTTCGAAGGCC 910 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||| || |||| ||||| | | ||||| Sbjct 909 ATGAGCATCATGAACAGTTTCGTCAACGATATCTTCGAACGCATTGCTGCTGAGGCATCC 850 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||||| || ||||||||| |||||| | ||||| ||||| ||||| || Sbjct 849 CGCTTGGCGCACTACAACAAGCGTTCGACGATCACGTCCCGCGAAATCCAAACCGCTGTT 790 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| || || || |||| ||||||||||||||| || || Sbjct 789 CGTCTGCTGCTGCCTGGTGAGCTTGCCAAGCACGCCGTCTCCGAAGGAAC 740 >seq7518 Length=5722304 Score = 89.7 bits (98), Expect = 7e-12 Identities = 162/230 (70%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579 || |||||| ||||||| | | ||||| | || ||| ||||||| ||| | ||| Sbjct 4512454 AACGGCGTGGCGTCGCCGATTTCGCCCTTGTTCGAGCCCAGCTTGCCCTGGATGCACTCG 4512513 Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639 |||| | || |||||||| || |||||||||||||||||||| || | ||||| ||| Sbjct 4512514 ATCAAATGCCCAATGGTCATACGGGACGGGATGGCGTGCGGGTTAATGATGATGTCCGGC 4512573 Query 1600640 GTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCGGTGGAGCGCACGCTG-----CCCA 1600694 || || ||| | | || | ||||||||||| ||| | | ||| | || Sbjct 4512574 GTAATGCCCTCGC-ACGTGA--ACGGCATGTCCTC-CTGGCG---ATACTGTATACCGCA 4512626 Query 1600695 CGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCT-CGGG 1600743 | || || || || ||||||||||||| | |||||||| | || |||| Sbjct 4512627 C-GTACCTTTCTGTCCGTGGCGCGACGCAAACTTGTCGCCGATCTGCGGG 4512675 Score = 87.8 bits (96), Expect = 3e-11 Identities = 207/303 (68%), Gaps = 15/303 (5%) Strand=Plus/Plus Query 1601179 GTCCTCCTGGTTGTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGG 1601235 |||||||||||||||| | || || || ||| |||||| || || || ||| Sbjct 4513083 GTCCTCCTGGTTGTAGCCCGTGTAGCACAGGATAGCCACGATCGAGTTGATACCGGCCGG 4513142 Query 1601236 GAGGCGCGTGGCGCCGATGACGTCCTCCATGG--CG-GTCTGCACCAGCGGCACCTGCGG 1601292 || | | || |||| || | |||||| | || ||| ||| |||||| | ||| Sbjct 4513143 CAG-CTCACGGAACCGAAGA--TACTCCATCGAACGCGTCGTCACGAGCGGCTTCATCGG 4513199 Query 1601293 GTAGCACAGGGCGTGCGACACCGTGTCGATG-GCA--TGGTCGGCGTTGAGCGACACGAC 1601349 |||| | || |||||| | |||||| ||| ||| ||| | ||| |||| | Sbjct 4513200 GTAGTAAAGCACGTGCGCGAGCGTGTCCATGCGCACGTGGAAGTTCGTGATGTACACACC 4513259 Query 1601350 GGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTT 1601409 | | || |||||| ||||| || | |||||| |||| ||||| ||||||||| | Sbjct 4513260 --CATCGC-CTGCTTACCCATAGCGCTTTGGTAGGTGTTACGCGGACTCTGGTTGTGATC 4513316 Query 1601410 GGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTG 1601469 | |||||||||||||| |||||| |||||| || | | ||| |||| ||| ||| Sbjct 4513317 CGGGAACGGGATGATGGAAGCGCAGACGCCCAAAATCATCGCCGGATGGATCTCACAGTG 4513376 Query 1601470 CGT 1601472 ||| Sbjct 4513377 CGT 4513379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176796430212402