Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq236 140 4e-28 >seq236 Length=1144 Score = 140 bits (154), Expect = 4e-28 Identities = 272/394 (69%), Gaps = 22/394 (6%) Strand=Plus/Minus Query 143187 TTAAGTACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCA 143246 || || || || || | |||||||| |||||||| || || ||| |||| || || ||| Sbjct 1143 TTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGCA 1084 Query 143247 CCACCACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAA 143306 |||||||| || ||||| || || |||||||| || || || ||||| || || |||| Sbjct 1083 CCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAAC 1024 Query 143307 GGAATAACTCCAGTAT-----GCTTGACTTCACCGTTTCCGATTTTTG-AACCTTCTGCA 143360 ||||| || |||| |||| || ||||| ||| | | ||| ||| Sbjct 1023 GGAATGCAGCCGGTATGGAAAGCTT--CTCCACCG----CGAATCGGGCTACCCAACGCA 970 Query 143361 CGCAACATCCCCGCGTTAATGCCAATACCTGCACGCT----TACTGATATACTCAATAAT 143416 || | |||||||| ||||| || || ||||| | || || | | |||| Sbjct 969 CGGATGCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTAT-TTCACAATGGC 911 Query 143417 GCTTGCACTGGCTTTGTTAATTGACTTAAGTGAGTCACCAGCTTCAATAACAACACAAGA 143476 ||||| |||| ||||| || | || |||||| ||| || | ||||| || Sbjct 910 GCTTGAGGTGGC---ATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGA 854 Query 143477 GCTAAACTGACGAGTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAA-TTT 143535 ||| |||||||| || || ||||| | || | ||| ||||| ||||||| ||||| ||| Sbjct 853 GCTGAACTGACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGAGAAATTTT 794 Query 143536 GACGAGTAGATACGGCGTCATAAAAACGAATTAC 143569 || | ||||| | ||||||||| ||||| |||| Sbjct 793 GAAG-GTAGAAATGGCGTCATAGAAACGCTTTAC 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544891530527160