Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7552 230 2e-55 seq7535 104 2e-17 >seq7552 Length=2500597 Score = 230 bits (254), Expect = 2e-55 Identities = 1187/1863 (64%), Gaps = 53/1863 (3%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || || || || ||||| |||||||||||| |||| ||| |||||||| Sbjct 1134890 TTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACATGCCA 1134949 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG--TAATTGG 130523 ||||| | || || || ||||| ||||| || | ||| || || | Sbjct 1134950 GTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGACGTCA--GCTTGCCATAGTTTG 1135007 Query 130524 GTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 | | ||| ||| ||||||| ||||||||| ||||| ||||| ||||| | ||||| | Sbjct 1135008 GCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGCGG 1135067 Query 130584 CCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 |||| | || ||| | ||| | |||||||| | || ||||| ||||| | ||| Sbjct 1135068 CCATTTTGATGCACGTTTTCACCGAG-ATCTCCCATACCGTTTTGTACAGATCGCGAATT 1135126 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | | ||||| ||||||| ||| | || | || ||||||| | ||||||||| Sbjct 1135127 TCCTGCGGTATAGCCGCAATCTTTTGGATCGAT-CCATTGTTGGACAGAATTTCGTTCTT 1135185 Query 130702 CATACTTTTATCGTACA-ATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 ||| ||| ||| | ||| | || ||| ||| | | | ||||| || | | Sbjct 1135186 CATGTCGAGATCCCACAGACCCATGTTGGTCAA-ATCCTGCAGAAGATGATGGTTCACCA 1135244 Query 130761 TTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGG 130820 || || || || | ||| ||||| ||| ||||| ||| |||| |||| || || | Sbjct 1135245 CCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACG 1135304 Query 130821 ATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAG 130880 |||| |||||||||| |||||||| || | || || ||||| |||| | || | Sbjct 1135305 ATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGCG 1135364 Query 130881 AATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGG 130940 |||| |||| |||||| | | ||| ||| |||||| || |||| | ||| ||| | Sbjct 1135365 AATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATCCG 1135424 Query 130941 TAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATT 131000 | |||| | ||||||||||| || | || | ||||| || || | |||||| | Sbjct 1135425 TCGGTT---CCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 1135481 Query 131001 CGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGT 131060 || ||| ||||| || || | |||| || ||| ||||||| || |||| Sbjct 1135482 CGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGT 1135541 Query 131061 AATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAA 131120 | || ||||||||| ||||| | ||||| | || || | | ||| ||||| ||| Sbjct 1135542 AGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGAT 1135601 Query 131121 ATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTT 131180 | ||| | || || || || || | ||||| | || | || | ||| || || Sbjct 1135602 AGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGC 1135661 Query 131181 TTAAATTACATTTACGC-GAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGT 131237 | ||| | ||| | | | ||| |||||| || | ||||| ||||||| Sbjct 1135662 GCATATTGGA---GCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGT 1135718 Query 131238 TTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAG 131297 | | ||||||| ||| | | | ||| |||| || | || ||| |||| Sbjct 1135719 TCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGT---TT 1135775 Query 131298 TTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGT 131357 | || | |||||||| || | || || |||||||| || || || || | Sbjct 1135776 TGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCAT 1135835 Query 131358 CATAATCG--CAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAA 131415 | | ||| | |||| |||||||| | |||||| || | || |||||||| | Sbjct 1135836 CCT--TCGACGAGTACTCTACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGAT 1135893 Query 131416 ATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGT 131475 ||| || || || |||||| ||| | |||||||||| |||||| || ||| || Sbjct 1135894 ATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGT 1135953 Query 131476 TTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGATATTTG 131533 ||| || || | ||| || | | | || | || | | || || || | Sbjct 1135954 TTCCACCTGCGATTCGATGA--TCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATA 1136011 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTG 131593 | | || ||| ||||| ||||| | | || || | || ||| | | || Sbjct 1136012 AAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCC---CCAGGTG 1136068 Query 131594 TCC---AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACT 131650 ||| | |||||| ||| || ||||| || ||||| ||||| || || Sbjct 1136069 TCCGATAGCCCGGGACAATCGTGCGGGCACATCAGACTCCACATTTCGTTCGCCTCCACA 1136128 Query 131651 CGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCT 131710 |||| ||| |||| ||||| | ||| | ||||| |||| || | || ||| Sbjct 1136129 CGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCC 1136188 Query 131711 TCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCC 131770 || | || | |||| |||| || | ||| || || || || ||||||| || || Sbjct 1136189 TCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCG 1136248 Query 131771 AAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATG 131827 | ||| | || | ||| || ||| || || || |||| || | || || | Sbjct 1136249 AGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTA 1136308 Query 131828 TTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG 131887 |||||||| ||||||| ||| ||| ||| |||||| | | || || || | ||| Sbjct 1136309 TTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAATCCCGTTCGTACCGGAGATG 1136368 Query 131888 TAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAG 131947 || | || || || | ||| ||| ||||| ||||| || || ||| | | || || Sbjct 1136369 TACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAA 1136428 Query 131948 ATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGG-CAATGTC 132006 ||||| || || | | || |||| ||||| || || | ||| || ||| || ||| Sbjct 1136429 ATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTC 1136488 Query 132007 GACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCT 132066 || | ||||| || || | ||| | | ||| | || | ||||| || || Sbjct 1136489 AAC-AGGAAGCAGGACGAAAGCTGGGGACGCTGAGTGGCCGCCGCAAACATAGTTGGCGA 1136547 Query 132067 GGCGTGTGTAAAAAGTTTTTTGGCCATGCACCGA---TACGATTGTATAGCGGACTCGAT 132123 |||||| ||||| | || || ||| || || | | || || | ||||| Sbjct 1136548 GGCGTGGGTAAAGTAACGCTCGGACA-GCA--GATTGTAGGTCTCGATTGCTGCATCGAT 1136604 Query 132124 ATCGCCCAGATGTATGGTCAAT-GCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCG 132182 || | ||| || | |||| || || ||||| |||||| || ||||||| | Sbjct 1136605 GTCCTCGCCATGGAT-GCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGA 1136663 Query 132183 TTTTGCCGTCGATTTTGATCAA--ATAACCGTTTTCCAAAGTTTTGAAACCAAAATATTT 132240 |||| || | ||| || | ||| || | || |||||| ||||| || || ||||| || Sbjct 1136664 TTTTTCCCTTGATCTTCAGCAAGTATGATCG--TTCCAAGGTTTTAAAGCCGAAATAGTT 1136721 Query 132241 GTA 132243 ||| Sbjct 1136722 GTA 1136724 >seq7535 Length=3646130 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| ||| | ||||| || || || || || ||||| Sbjct 875806 TGCCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCG 875865 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | || || ||||| || |||||| | || |||||||| ||||| |||| Sbjct 875866 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCG 875925 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || |||||| |||| | || | || || | ||||| || Sbjct 875926 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCT-CA 875984 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || || || | || || |||||||||||||| || || |||||| Sbjct 875985 ACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 876035 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||| ||| | || || || || || || || ||||| | Sbjct 876036 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 876095 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || || ||| | || |||||||| ||||| ||||| Sbjct 876096 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 876155 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | || || | ||||| |||| Sbjct 876156 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCT-CAAC 876214 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||||||||||||| || || |||||| Sbjct 876215 CTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 876263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424879912919352