Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq7552 100 9e-16 >seq7552 Length=2500597 Score = 100 bits (110), Expect = 9e-16 Identities = 273/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || || | |||||| ||| || ||||||||||| || ||| ||| || Sbjct 1136331 CCGATGCTGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGG 1136272 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || ||||| ||| ||||||| || ||||||||||| | || || |||| | Sbjct 1136271 CCTGGAGCATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCGAGTTTCTCGAT 1136212 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGG 255160 ||| | || ||||||| |||||| | ||| || ||||| | ||| ||||| Sbjct 1136211 CTGAAGAAAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGG 1136152 Query 255161 -TGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATGTGTC 255218 | | | || ||||| |||| || ||||| ||| |||| | ||||| || ||||| | Sbjct 1136151 ATACCG-GACCTGTTCATGCAGCGTGTGGAGGCGA-ACGAAATGTGGAGTCTGATGTGCC 1136094 Query 255219 CCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGG 255278 | || | ||||| ||| ||| | ||||| || ||||| || || ||||| || Sbjct 1136093 CGCACGATTGTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGG 1136034 Query 255279 AGTACGAGCGTGCCGGCCGGTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAACACGA 255338 ||||||| | || || || | || || ||| ||| || | | ||| ||| Sbjct 1136033 GGTACGAGAAAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGGTTTGCGA 1135974 Query 255339 TGGTGCGCAT-GCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGA 255387 | | || || |||| |||||||||| | |||| | | || |||| || Sbjct 1135973 TCAT-CGAATCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGA 1135925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588121891810845