Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7552 138 1e-27 >seq7552 Length=2500597 Score = 138 bits (152), Expect = 1e-27 Identities = 458/704 (65%), Gaps = 15/704 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| | ||| | ||||| || || || ||||||| || || | |||||||| ||||| Sbjct 1135276 GTAAACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGA 1135335 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || |||| || || || |||| || | || ||| ||| Sbjct 1135336 AGCCGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTC 1135395 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG- 110883 ||| | | |||||| | || | | | |||| | |||| |||| || |||| Sbjct 1135396 CTTCAACTCGGCCCAGTTCCACAGATCCG-TCGGTTCCTTGTTCC-ACATCTCGTACTGC 1135453 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| |||||| | | ||| ||||| | || || || | ||| | | || Sbjct 1135454 AAGATGCCCTTGCT-CACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGC 1135512 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 ||| ||||||||||| ||||| | ||| || |||||||| || || | ||| | Sbjct 1135513 CAACTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAG 1135572 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 || | || || || || | | ||||| || || || |||| || | || Sbjct 1135573 CTTTTGAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCC 1135632 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 111120 || || || | || || || ||||| |||||||| || ||| || ||| || Sbjct 1135633 CTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAG---CGCTTAGCCTCCGGCAC 1135689 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| |||| ||||||| | ||| ||||| || || |||| | || ||| Sbjct 1135690 GGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTC 1135749 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 | || ||| || | ||| | || | |||| || ||| || | | |||||| Sbjct 1135750 CTTCAGCTTTGCAAAGTCATACGTTT---TGTCTTGCTTTACAAACATGTTCAAGGCGAT 1135806 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || |||| |||||| || || ||||||||| | |||||||| |||||| || || Sbjct 1135807 CGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCTACAATTTCAGTGCA 1135866 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||||||| || || || || | ||||| |||||||| || ||||| ||||| Sbjct 1135867 CAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATC 1135926 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 |||||| |||||||| || || || ||| ||| |||| || Sbjct 1135927 CTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGA 1135970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627949405941600