Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7552 109 7e-19 seq7516 104 3e-17 >seq7552 Length=2500597 Score = 109 bits (120), Expect = 7e-19 Identities = 785/1248 (63%), Gaps = 35/1248 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || || |||||||| || || || | |||| ||||||| |||| | ||| || || | | Sbjct 1134932 CGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGACGTC 1134991 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAG---GTTCATACTTTGGGATTGATCGATG 117953 | |||| | |||| ||| || | | ||| | ||| || |||||||| Sbjct 1134992 AGCTTGCCATAGTTTGGC---TCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATA 1135048 Query 117954 AA-GCGTCCCCGATCCGCCGCCATATCAAT-CACATCCTTCATCTTGATTTCCCACACAG 118011 || ||| || ||||| || ||||| | || ||| | |||| | ||| ||||| || | Sbjct 1135049 AACGCG-CCACGATCTGCGGCCATTTTGATGCACGTT-TTCACCGAGATCTCCCATACCG 1135106 Query 118012 TCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCG 118071 | |||| || | ||| || | || ||| || | || |||||||| |||||| Sbjct 1135107 TTTTGTACAGATCGCGAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTG- 1135165 Query 118072 CCTTGACCATGAGATC---CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCT 118128 ||| || | || |||||| || ||| ||||| || || | | ||||| Sbjct 1135166 --TTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCT 1135223 Query 118129 CCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATAT 118188 || ||||| | || || || ||||| |||| || ||| || || | | Sbjct 1135224 GCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGT 1135283 Query 118189 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGG 118248 | | |||||| ||||| || | |||||||| || | ||||| || ||||| || || | Sbjct 1135284 TCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCG 1135343 Query 118249 GCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAG 118308 |||| || |||| || || || || | || | | || |||||| | Sbjct 1135344 GCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACT 1135403 Query 118309 CGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 118366 || |||||| | || | | | | ||| | |||||| || |||| | ||| || Sbjct 1135404 CGGCCCAGTTCCACAGATCCG--TCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCC 1135461 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 118426 | | | | || ||||| | ||||| || || || || | ||||| || | Sbjct 1135462 CTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACA 1135521 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG- 118485 |||||| || || || ||| || || ||||| || || | ||| | || || | Sbjct 1135522 GCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTA--GCTTTTGA 1135579 Query 118486 -CCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGAC 118543 |||| ||| || ||| || ||| || || || |||| || | || || || Sbjct 1135580 GCCTCTTCGCTTTCGTACG-GATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCAC 1135638 Query 118544 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAA 118603 |||| || || || | || | |||||| || | ||| | ||||||||| | Sbjct 1135639 GCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTA 1135698 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663 ||| ||| || | | || ||||| || || ||| | || ||| | ||||| Sbjct 1135699 ATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTT 1135758 Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 118723 | | | ||| | | | |||| || ||| || | | |||||| || ||||| Sbjct 1135759 TGCAAAGTCATACGTTT---TGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAG 1135815 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 ||| || || | ||||||||| | |||||||| |||||| ||||||||||| || Sbjct 1135816 ATTGCATACCGCTACCTCATCCTTCGACGAGTACTCTACAATTTCAGTGCACAAGTTGGA 1135875 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT--GTGTTACACGCATCCTTGTAA 118841 || || |||||||| | |||| || || ||||| || || ||||||||||| Sbjct 1135876 ACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATCCTTGTAC 1135933 Query 118842 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCA 118901 |||||||| || || || ||| || || | || || || ||| | ||| Sbjct 1135934 AGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGC 1135993 Query 118902 GCTGGCACAGTGGCG-TTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 || ||| || || | || ||||||| ||||||| ||||| || || || Sbjct 1135994 GCCTTCAC-CTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAA 1136052 Query 118961 CTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTG 119020 |||||| ||| || || || ||||| || | | ||||| | ||| ||| Sbjct 1136053 CTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGACTCCACAT 1136112 Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 | | |||| || |||| |||||| ||||| || |||||||| || Sbjct 1136113 TTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGC 1136160 >seq7516 Length=3907879 Score = 104 bits (114), Expect = 3e-17 Identities = 200/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 179038 GTGAAGATGTACCTCGTTTGAGACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTG 179096 |||||||||||||| | | ||| || ||||||||| | || ||||| || || || Sbjct 2870249 GTGAAGATGTACCTGGGGCTGG-CGCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTG 2870191 Query 179097 ACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 179156 ||| | || | || |||||||| ||||| || | ||||| | |||| |||| Sbjct 2870190 ACCGCCCGGGTACAGCAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 2870131 Query 179157 AATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGC 179216 ||||| ||| || | || ||||||||||| || ||||| |||||||| | | Sbjct 2870130 GATCGTCGAGCAGAGCGACATCTCGCCGTGATGGTAGGCGGACTTTTCCGCCACCGAACC 2870071 Query 179217 CGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTG-TGGAAGCACGCATACATCA 179275 |||| ||| |||||||||| ||| |||| | ||| | | |||||||| |||| || Sbjct 2870070 GGCCAGCTGGGCCACCTTCACCTCGCGCTTGTCG-TCTCGCTTGAAGCACGTGTACAGCA 2870012 Query 179276 CCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 179325 |||| | || ||||| | ||||| |||| || ||||| ||| Sbjct 2870011 CCTTGCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGAATGGAGCGC 2869962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618353868040760