Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7526 102 1e-16 seq7552 86.0 7e-12 >seq7526 Length=6110091 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||||| ||||| || | ||||| || |||||||||||||||||| ||| ||| Sbjct 4673297 CTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTT 4673238 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | ||| || | ||||| |||||||| || || ||||| || ||| |||||| ||||| Sbjct 4673237 CGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGACTCACCTTCTCGAACGA 4673178 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| || ||||| || || ||| || ||||| Sbjct 4673177 GCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTTTGC 4673139 >seq7552 Length=2500597 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165 ||||| || || || ||||| || ||| | || |||||| | ||| | || || || Sbjct 330236 TATGGCCGGGTGGCTCCACGTTCCGGTTTGGCCGTGAAAAACTTCATCGATGTGGGCGCC 330295 Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCA--CGGAG 154223 ||||| || || |||||| |||| | ||| ||| || || |||||||| | ||| Sbjct 330296 GGTGTCGTCGACGAGGACTACCGGGGTAACGTCGGAGTTGTACTGTTCAATCATTCCGAG 330355 Query 154224 ACAAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACA 154263 ||||| |||||| || |||| ||||| ||||||||||| Sbjct 330356 ACAAA--CTTTGAAGTTAAGAAAGGTGATCGCATCGCACA 330393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583184093914040