Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq7535 192 2e-43
seq127 138 3e-27
seq7521 136 1e-26
seq7597 89.7 2e-12
seq7566 89.7 2e-12
seq7587 87.8 5e-12
seq7534 87.8 5e-12
seq7529 87.8 5e-12
seq7524 87.8 5e-12
seq7517 87.8 5e-12
seq7543 84.2 7e-11
>seq7535
Length=3646130
Score = 192 bits (212), Expect = 2e-43
Identities = 181/231 (78%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| |||||||| | | ||||| ||||||||||||||||| || || || ||||| ||
Sbjct 875804 CATGCCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTC 875863
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || ||||| || ||||| ||||| |||||||| ||
Sbjct 875864 CGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGG 875923
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| ||||| || || ||||| || || || || ||||| ||||||| ||| ||||| ||
Sbjct 875924 CGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTC 875983
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||| || || | ||||||||||| || ||||| || |||||||||||
Sbjct 875984 AACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034
Score = 187 bits (206), Expect = 8e-42
Identities = 180/231 (78%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| |||||||| || ||||| || || || ||||| ||
Sbjct 876032 CATACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTC 876091
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || |||||||| ||||| ||||| |||||||| ||
Sbjct 876092 CGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGG 876151
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| ||||| || || ||||| || || || || ||||| ||||||| ||| ||||| ||
Sbjct 876152 CGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTC 876211
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || | ||||||||||| || ||||| || |||||||||||
Sbjct 876212 AACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262
Score = 143 bits (158), Expect = 8e-29
Identities = 145/189 (77%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| |||||||| || || || || || || ||||| ||
Sbjct 876260 CATACCACCACGCAGACGGAGAACCAGATGAAGGGTCGATTCCTTCTGGATGTTATAGTC 876319
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || |||||||| ||||| ||||| |||||||| ||
Sbjct 876320 CGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGG 876379
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| ||||| || || ||||| || || || || || || ||||||| ||| ||||| ||
Sbjct 876380 CGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATCGTATCCGATGGCTC 876439
Query 140687 AACTTCAAG 140695
|||||| ||
Sbjct 876440 AACTTCGAG 876448
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 2446686 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 2446745
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 2446746 CCCGGCATCTCCA 2446758
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 2448835 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 2448776
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 2448775 CCCGGCATCTCCA 2448763
>seq127
Length=1066
Score = 138 bits (152), Expect = 3e-27
Identities = 238/343 (69%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAACTTCCCCAGCACATTC 130720
||| |||||||||| | | |||||||| |||||||| || || || | |||||
Sbjct 705 CATGCCATAGAACAGCATGAATTTTTCACCGTTTTCTTCCACGACGGTTCCTTCGCATTC 764
Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTT 130780
||| || | || | ||| || || ||||| ||||| || || || | ||||| |||||
Sbjct 765 ATCGTGGCCCGCCAGCATACCGCCGAGCATCACAAAGTCTGCACCGCCGCCAAACGCTTT 824
Query 130781 CGCAATATC-CCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAATCCAT 130839
|||| ||| ||||| | | ||| || ||||| | || || ||| | || |
Sbjct 825 GGCAACATCGCCCGGCACAGA-ACAGCCGCCATCGCTGACAATCTGACCACCGAGGCCGT 883
Query 130840 GTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTT 130899
|||||||||| || ||||| | ||||||||||| || || || || || |||
Sbjct 884 GTGCCGCATCGGCGCACTCGATCACGGCAGAAAGTTGCGGGTAGCCTACACCGGTTTTCA 943
Query 130900 TTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCCTGCTA 130959
|| || ||||| |||| ||||| || || || | ||| || ||||| || || | ||
Sbjct 944 CTCGGGTGGTACAGACAGAGCCTGGGCCGATCCCTACTTTCACGATATCGGCACCCGATA 1003
Query 130960 AAATTAGTGCTTCGGTCATTTCTCTAGTAGCCACATTACCTGC 131002
||| ||| |||| |||||| | ||| |||||||||| ||
Sbjct 1004 GAATCAGTTCTTCTACCATTTCACCAGTCACCACATTACCGGC 1046
>seq7521
Length=12184106
Score = 136 bits (150), Expect = 1e-26
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| ||||| || || || || | || || ||||| || || || || || || |||||
Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
||||| |||||||| || ||||| ||||| || ||||| || || || || ||||| ||
Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|||| || || || || || |||||||| | ||||| ||||| |||||||| || |||
Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 9381338 ATCTGCAT 9381345
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 7348461 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 7348402
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 7348401 CCCGGCATCTCCA 7348389
>seq7597
Length=955730
Score = 89.7 bits (98), Expect = 2e-12
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948
||||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| |
Sbjct 217055 GGGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGAT 216996
Query 235949 ACCCAGCATCTCCA 235962
|||| |||||||||
Sbjct 216995 ACCCGGCATCTCCA 216982
>seq7566
Length=960142
Score = 89.7 bits (98), Expect = 2e-12
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 235886 ATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATC 235945
||| |||| ||||| ||| ||||||| ||||||||| ||||| ||||||||| ||||||
Sbjct 833500 ATACGGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACTGGGATC 833559
Query 235946 AAAACCCAGCATCTCCA 235962
| ||||||||||||||
Sbjct 833560 GATACCCAGCATCTCCA 833576
>seq7587
Length=1787124
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 141895 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 141954
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 141955 CCCGGCATCTCCA 141967
>seq7534
Length=4057783
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| | |
Sbjct 1789456 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACTGGGATCGATA 1789515
Query 235950 CCCAGCATCTCCA 235962
|||||||||||||
Sbjct 1789516 CCCAGCATCTCCA 1789528
>seq7529
Length=4681778
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 4390274 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 4390333
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 4390334 CCCGGCATCTCCA 4390346
>seq7524
Length=14321806
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 5308019 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 5308078
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 5308079 CCCGGCATCTCCA 5308091
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 5368521 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 5368580
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 5368581 CCCGGCATCTCCA 5368593
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 5370793 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 5370852
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 5370853 CCCGGCATCTCCA 5370865
>seq7517
Length=11427604
Score = 87.8 bits (96), Expect = 5e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 3226260 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 3226201
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 3226200 CCCGGCATCTCCA 3226188
Score = 87.8 bits (96), Expect = 5e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 3822756 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 3822815
Query 235950 CCCAGCATCTCCATAC 235965
||| ||||||||| ||
Sbjct 3822816 CCCGGCATCTCCAGAC 3822831
Score = 87.8 bits (96), Expect = 5e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 235877 TCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGT 235936
||||||| | |||| ||||| ||| ||||||| ||||||||| ||||| |||||||
Sbjct 3836534 TCGTTCACCGCATGGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGT 3836593
Query 235937 ACCGGGATCAAAACCCAGCATCTCCA 235962
||||||||| | |||| |||||||||
Sbjct 3836594 ACCGGGATCGATACCCGGCATCTCCA 3836619
>seq7543
Length=2429393
Score = 84.2 bits (92), Expect = 7e-11
Identities = 251/383 (66%), Gaps = 6/383 (2%)
Strand=Plus/Minus
Query 182919 ACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGT 182978
|| || | |||||| || | ||| | |||||| | ||| ||||||| ||| ||||| ||
Sbjct 25393 ACGTTCAGAATACCGTTGGCGTCCAGATCAAAGGTTACCTCAATCTTTGGCACACCGCGC 25334
Query 182979 GGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTT 183038
|| || ||||| || | || || | || | ||| || || || || |
Sbjct 25333 GGTGCCGGCGGAATGCCTGATAGGTCGAACTGGCCCAGCAGATTGTTGTCCTTTGTCATG 25274
Query 183039 GCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAA 183098
||||||||||| ||| | || ||||| | ||| | ||||| || || || || ||
Sbjct 25273 GCTCTCTCGCCCTCAAACACCTGAATCGACACTCCCGGCTGGTTGTCCGCGTAGGTCGAG 25214
Query 183099 AAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGC-GGAACAATTACAGTCATTAC 183157
|| ||| | | || ||||| ||||||||| || || | | ||||| ||
Sbjct 25213 AAGGTCTGCGTCTGTTTGCACGGAATGCGCGAATTTCGCTCGATCAGCTTC-GTCATCAC 25155
Query 183158 TTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCT-- 183215
| | | ||| ||||| | ||| | || || || || ||||| | || |||| ||||
Sbjct 25154 TCCGCCGGCCGTTTCGATTCCGAGCGACAACGGAGCCACATCGACCAACAATACATCTTG 25095
Query 183216 GATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCA 183275
||| ||| || || |||| | ||| || || || || || ||||| |||||
Sbjct 25094 GATCTTT--TCGTCCTTGTCTCCACTAAGAATAGCCGCCTGGACGGCCGCACCGTATGCT 25037
Query 183276 ACAGCTTCATCTGGGTTAATTGA 183298
|| || ||||| ||||| || ||
Sbjct 25036 ACCGCCTCATCCGGGTTGATCGA 25014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515050143233363
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