Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7552 298 6e-76 >seq7552 Length=2500597 Score = 298 bits (330), Expect = 6e-76 Identities = 1118/1726 (65%), Gaps = 44/1726 (3%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || || | |||||||||||||| ||| || || |||||| ||| | Sbjct 1136637 ATGCGCGTTGCTATTGGCATCCATGGCGAGGACATCGATGCAGCAATCGAGACCTACAAT 1136578 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 ||| || | || | ||| || ||||| |||| || | || || | || | Sbjct 1136577 CTGCTGTCCGAGCGTTACTTTACCCACGCCTCGCCAACTATGTTTGCGGCGGCCACTCAG 1136518 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 || ||| | ||| ||| ||||| || | ||| || || ||||||||||||||| Sbjct 1136517 CGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATC 1136458 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| ||||| ||| |||| || | || || |||| | |||| || ||||| | || Sbjct 1136457 TACGACACGCTGAAGCAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACTGAAC 1136398 Query 19358 -TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGG 19416 ||| | |||||| ||| || || ||| || |||||||| | | |||| Sbjct 1136397 GTGCACTG-TATCCGCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATTTCGAACGG 1136339 Query 19417 TATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGG 19476 | | || || ||||| ||||||| |||||| ||||| |||||||| | ||||| ||| Sbjct 1136338 TCTGGTGCCGATGCTGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAA 1136279 Query 19477 CAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTT 19536 ||| || || | ||||||||||| |||||||| ||||| | || | | || || Sbjct 1136278 CAAGCGGCCTGGAGCATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCGAGTT 1136219 Query 19537 CCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGC 19596 ||||| ||| ||| || | |||||| | ||| || ||| | || || Sbjct 1136218 TCTCGATCTGAAGAAAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGC 1136159 Query 19597 CTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGAT 19656 | ||||| |||||||| |||||| || || ||| | ||||| ||| ||||| Sbjct 1136158 ACTCTGGATACCGGACCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGTCTGAT 1136099 Query 19657 GTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTA 19716 |||||||||||| || || || ||| | ||| || ||||| | |||| | || |||| Sbjct 1136098 GTGCCCGCACGATTGTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTA 1136039 Query 19717 CCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTG-GG 19775 | | |||| |||| || || | | | ||| ||| | ||| |||| || Sbjct 1136038 CACGGGGTACGAGAAAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGA--TCTGTGG 1135981 Query 19776 ACCGCG-TCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGC- 19833 ||| || || || ||||| || |||||| |||||||||| |||||||| || Sbjct 1135980 TTTGCGATCATCGAATCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGATGCT 1135921 Query 19834 CGCGAACG-CCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTA 19892 || | || |||| || ||| |||| |||||| | ||||| | |||||| |||| | Sbjct 1135920 TGCAATCGTAAAAGT--AACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTGCA 1135863 Query 19893 CTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGT 19952 ||||||| | ||| || | ||| ||| || || || |||||||| || | Sbjct 1135862 CTGAAATTGTAGAGTACTCGTCGAAGGATGAGGTAGCGGTATGCAATCTGGCCTCGATCG 1135803 Query 19953 GCCTGCCGACTTTCGTCAAG---GCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGA 20009 | || | || || ||| | | | | |||||||| || || | || || Sbjct 1135802 CCTTGAACATGTTTGTAAAGCAAGACAAAACGTATGACTTTGCAAAGCTGAAGGAAGTCG 1135743 Query 20010 CCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCG 20066 | | ||| ||||| |||||||| |||| ||| || | || || | | | Sbjct 1135742 CTAAGACCGTAACGCGCAATCTGAACAAAATCATTGATGTCAATTACTATCCCGTGCCGG 1135683 Query 20067 AGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGG 20126 |||| |||| || |||||||||||| ||||||||| ||||||||| |||||| ||| Sbjct 1135682 AGGCTAAGCGC---TCCAATATGCGCCACAGGCCGATCGGGATCGGCGTGCAGGGCATGG 1135626 Query 20127 CCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA-AGGCGCGCGAGCTCAAC 20185 |||| | ||||| || | || | | ||| | | | |||| | |||| || Sbjct 1135625 CCGATGCGTTCATCCTGATGCGCTATCCGTACGA-AAGCGAAGAGGCTCAAAAGCTAAAT 1135567 Query 20186 AAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG---TGCGAACTCGCC 20242 || || ||||| || | ||| ||| || |||||| || || || | ||| Sbjct 1135566 CAGCAAATATTCGAAACCATCTACTACGGCGC---GCTGGAAGCGAGCTGTGAGTTGGCC 1135510 Query 20243 AAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAG 20302 || || ||||||||||||| | |||| || | | | |||| ||| | ||| Sbjct 1135509 GCTCGAGATGGTCCGTACGAGACGTACGAGGGCAGTCCGGTGAGCAAGGGCATCTTGCAG 1135450 Query 20303 CCGGACATGTGGGGC--GTCACTGA-GAATGAGT---TTTGGAGCGCCCTCAAGGTTGAG 20356 || |||||| | | || || | || || ||| || | |||| || Sbjct 1135449 TACGAGATGTGGAACAAGGAACCGACGGATCTGTGGAACTGGGCCGAGTTGAAGGAAAAG 1135390 Query 20357 ATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACC 20416 ||| | ||||| ||||||| ||| |||| | || || |||||||| || || || Sbjct 1135389 ATCGCCAAGCACGGCATTCGCAATTCGCTGCTGTTGGCCCCGATGCCGACGGCTTCCACG 1135330 Query 20417 GCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGT 20476 || || || | || ||||| || | ||||||||||||||| | ||| | ||| | Sbjct 1135329 GCACAAATTCTCGGCAACAATGAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGG 1135270 Query 20477 CGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAG 20536 || ||| | || |||||| |||| ||| | || || | | || ||| || Sbjct 1135269 CGCGTGCTGTCGGGCGAGTTCCAGGTGGTGAACCATCATCTTCTGCAGGATTTGACCAAC 1135210 Query 20537 ATCGATATGTGGTCGCCCAAAATTAAGAATGAAAT--TGTCCGAGCCGGCGGGAGCG-TC 20593 || | | ||||| | | | || ||||| ||||| ||||| | ||| || || Sbjct 1135209 ATGGGTCTGTGGGATCTCGACATGAAGAACGAAATTCTGTCCAA---CAATGGATCGATC 1135153 Query 20594 C-AGGCATT--GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATC 20650 | | ||| || ||| || ||| | | || | |||| || |||||||| ||| Sbjct 1135152 CAAAAGATTGCGGCTATACCGCAGGAAATTCGCGATCTGTACAAAACGGTATGGGAGATC 1135093 Query 20651 CCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAG 20710 | ||| | |||| | ||||| || ||||| ||||| | ||||| ||||| || Sbjct 1135092 TCGGTGAAAACGTGCATCAAAATGGCCGCAGATCGTGGCGCGTTTATCGATCAGTCGCAA 1135033 Query 20711 TCGCTCAATGTCTTCATGGAGAATCCGAGC-CTGGCGAAGCTGAGCTCCATGCATATGTA 20769 ||| |||| | | | | | | || | | |||| ||||||| || || ||| | || Sbjct 1135032 TCGTTCAACATTCACGTCGCGGAGCCAAACTATGGC-AAGCTGACGTCGATCCATTTCTA 1134974 Query 20770 CGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 |||||| | | |||| | || || ||||||||||||||||| ||| Sbjct 1134973 TGGCTGGAAGATGGGGTTGAAAACTGGCATGTACTATCTGCGTACC 1134928 Score = 257 bits (284), Expect = 2e-63 Identities = 1126/1752 (64%), Gaps = 46/1752 (3%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| |||||||||||| || || | ||| ||||||| || || | || || | Sbjct 1134929 GTACGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGAC 1134988 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAG---ATGTTGAGCGACTGGGACTGGTCG 78306 | ||||||| ||| | | || |||| || | ||||||| ||| || ||||| ||| Sbjct 1134989 GTCAGCTTG-CCATAGTTTGG--CTCCGCGACGTGAATGTTGAACGATTGCGACTGATCG 1135045 Query 78307 ATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATG 78366 || |||| || || || || ||||| | |||| || || || |||||||| | Sbjct 1135046 ATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACC 1135105 Query 78367 GTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCC---AGCGCTTGTA-CGCTCCCACC 78422 || ||| | | | || | | | || || | | ||| | || ||| | Sbjct 1135106 GTTTTGTACAGATCGCGAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCC-ATT 1135164 Query 78423 GGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCG 78482 | || |||||| ||||| || | | | ||| || || || | |||| | Sbjct 1135165 GTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTG 1135224 Query 78483 GACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTT 78542 | || || |||| | || ||||||||| | ||| || | ||| | ||| Sbjct 1135225 CAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTT 1135284 Query 78543 GGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGG 78602 | ||||||||||||||| | || ||||| || | || || || || || || ||||| Sbjct 1135285 CGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGG 1135344 Query 78603 CATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTA---- 78658 ||| || || | ||| || ||||| |||| || ||| | ||||| |||| | Sbjct 1135345 CATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTC 1135404 Query 78659 GGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTC 78716 |||| || ||| | || ||| | | |||||| || || | ||| |||| Sbjct 1135405 GGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTT 1135464 Query 78717 GGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGA 78776 | | |||| |||| | |||||||||| | || || ||| | || || Sbjct 1135465 GCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCT 1135524 Query 78777 CTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT 78836 | | ||| || ||| ||| | | ||||| || || || |||| | |||| Sbjct 1135525 CGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTC 1135584 Query 78837 GGTCTCGT-CGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895 || | | || ||| | || | || ||||| ||||||||| |||||| ||||||| Sbjct 1135585 T-TCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGA 1135643 Query 78896 TAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCGCCTCGGTCGGGTAAAAGT 78952 | ||||||| | ||||||||| ||| | ||| ||| | ||| |||| | Sbjct 1135644 TCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAA---T 1135700 Query 78953 TCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGG 79012 | ||| |||| |||||| || ||||| ||| | || || || | || || | Sbjct 1135701 TGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTG 1135760 Query 79013 CGAAATCAAAATGATTTCCTTTGATG---AAAGTCGGT--AGGCACAGCGATGCCAGGTT 79067 | || ||| | | ||| ||| | ||| | | |||| | ||| ||||| || Sbjct 1135761 CAAAGTCATAC-GTTTTGTCTTGCTTTACAAACATGTTCAAGGCG-ATCGAGGCCAGATT 1135818 Query 79068 GCACACGGCCGTCTCGTCCG--GGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGAC 79125 ||| || || ||| ||| | | || | ||| | ||||| |||||||| || || Sbjct 1135819 GCATACCGCTACCTCATCCTTCGACGAGTA--CTCTACAATTTCAGTGCACAAGTTGGAA 1135876 Query 79126 GACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCAC 79185 | |||||||||||||| |||| |||||| || || || || || |||||||| | Sbjct 1135877 CATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGC 1135936 Query 79186 ATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGTCC-CAGATGTCCCGGG 79243 |||||||| ||||| || ||||| | || || ||| || ||||| || | | Sbjct 1135937 ATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGAT--CCTGCG 1135994 Query 79244 CCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAG 79303 || || | | | | ||||||| | ||||| | ||||| || | ||| Sbjct 1135995 CCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACT 1136054 Query 79304 CCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 | || || || || | || || || || ||||||||||||||||| ||| | Sbjct 1136055 CTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGACTCCACATTT 1136114 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGC 79423 ||| | ||| || || |||||| |||||||| ||||| || || || | ||| | Sbjct 1136115 CGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCC 1136174 Query 79424 GGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGG 79483 | || | |||||| | ||| ||| ||| |||||||| || | || || Sbjct 1136175 GTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCAC 1136234 Query 79484 CGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGA 79543 | ||||||||||| |||||||||||||| | || |||||| ||| ||||| | || Sbjct 1136235 CATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGA 1136294 Query 79544 CGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGT 79603 ||||||| ||||| |||||| | || || ||||| ||||| | |||| | | |||| Sbjct 1136295 CGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAATCCCGT 1136354 Query 79604 TCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCC 79662 |||| ||| ||| || || |||| || || | ||| || | ||||||||| Sbjct 1136355 TCGTACCGGAGATGTACGTTCCCTTCGCGCGGAT-ACAGTGCACGTTCAGTCCGATGCCA 1136413 Query 79663 CCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAG 79722 |||| | |||| || || | || |||| ||| ||||| |||||||||||||| || Sbjct 1136414 CCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTA 1136473 Query 79723 TCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTG 79782 || || ||| | | |||||||||| ||| | ||| || | || | || Sbjct 1136474 TCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGAGTGGCCGCCGCA 1136533 Query 79783 AAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTCATCAGATCGTACGTCTC-CT 79840 || | || |||| ||||| || ||| ||| | || || ||||| ||| ||||| | Sbjct 1136534 AACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGG-ACAGCAGATTGTAGGTCTCGAT 1136592 Query 79841 TGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGG 79900 || || || ||| ||||| |||||||| | || |||||||| | | || ||||| Sbjct 1136593 TGCTGC-ATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGG 1136651 Query 79901 GCGTCTCGCCGA 79912 | |||| ||| Sbjct 1136652 GGCGCTCGACGA 1136663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548452662132240