Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7552 239 5e-58 seq7526 170 2e-37 seq7516 161 1e-34 >seq7552 Length=2500597 Score = 239 bits (264), Expect = 5e-58 Identities = 475/700 (68%), Gaps = 4/700 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 |||||||| |||||| ||||||| |||| || | || | | || ||| | ||| Sbjct 1136562 TACTTTACCCACGCCTCGCCAACTATGTTTGCGGCGGCCACTCAGCGTCCCCAGCTTTCG 1136503 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||| || | ||| || || || || ||||||||||| ||||| ||| Sbjct 1136502 TCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAG 1136443 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTC-GAACGTCC 53447 ||||||||| || || |||| | | ||||| ||||| | || ||| | | | ||| Sbjct 1136442 CAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACTGAACGTGCACTGTA--TCC 1136385 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 | ||||| || || ||| || |||||||| | | | || | ||||| |||| Sbjct 1136384 GCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATTTCGAACGGTCTGGTGCCGATGC 1136325 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 | ||||||| |||||| ||||| ||||||||| | |||||||| ||||| || Sbjct 1136324 TGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAG 1136265 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | ||||||||||| |||||||||||||| | || || | ||||||||||| ||| Sbjct 1136264 CATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCGAGTTTCTCGATCTGAAGA 1136205 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 || || | || ||| | ||| || ||| ||||| || || ||||| |||| Sbjct 1136204 AAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCGG 1136145 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||||| |||||| | |||| |||| |||||||||||| |||| | Sbjct 1136144 ACCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGTCTGATGTGCCCGCACGATT 1136085 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 | ||||| || || || || || ||||| | || |||| | ||||| Sbjct 1136084 GTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGA 1136025 Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867 |||| |||| | | | |||| ||||||| || | ||| ||| ||| || | Sbjct 1136024 AAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGGTTTGCGATCATCGAAT 1135965 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 |||||||| || || ||||||||| ||||||||| | ||| || || | Sbjct 1135964 CGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTA 1135905 Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||||| |||| |||||| |||||||| |||||| || Sbjct 1135904 ACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTG 1135865 >seq7526 Length=6110091 Score = 170 bits (188), Expect = 2e-37 Identities = 293/421 (70%), Gaps = 11/421 (3%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| || | |||||| || ||||| | |||||||||||||| Sbjct 5336809 CGCCTGCTCGACAAACTCCCGCACCGAGTGCGTTTCGCCCGTCGCGATCACGAAATCTTC 5336868 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || | |||||||| ||| |||||||| || | ||||||||||| ||||| ||||| Sbjct 5336869 CGGCCGCTCCTGCTGCATCATCAGCCACATCGCCTCGACGTAGTCCTTCGCGTGGCCCCA 5336928 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCT-----TGGCCG-TCTTGTTCCA 124654 ||||||||| | || || || || ||||| | || |||||| | || Sbjct 5336929 GTCGCGCTTCGAGTCGAGATTGCCCAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTT 5336988 Query 124655 CTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTC 124714 || || | | | || || ||||||||||| || | || || ||| ||||| Sbjct 5336989 GGCCACCGAGC---GGGTGATTTTGCGCGTCACGAAGTTCTCCCCCCGGCGCGGCGACTC 5337045 Query 124715 GTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGT 124774 ||| |||||||| |||||| | || || ||||| |||||| ||||| ||||| || Sbjct 5337046 GTGATTGAACAGGATGCCATTGCAGGCGAACATGTCGTACGCTTCGCGATAGTTGATCAC 5337105 Query 124775 CATCCAATACCCAAAGAGCTTGG-ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT 124833 ||||| ||||| | | ||||| ||||| | || || ||||| ||||| ||||| | Sbjct 5337106 AATCCAGTACCCGTACATCTTGGCACACG-CGTACGGTGAGCGGGGATAGAACGGGGTCT 5337164 Query 124834 TTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGA 124893 |||| ||||||| | || | | ||| || ||| ||| || || ||||| |||| Sbjct 5337165 TTTCGTTTTGGGGCGTTTCCGCCACCTTGCCGTACAGCTCGGACGTCGATGCCTGGTAGA 5337224 Query 124894 A 124894 | Sbjct 5337225 A 5337225 Score = 116 bits (128), Expect = 4e-21 Identities = 235/342 (69%), Gaps = 9/342 (3%) Strand=Plus/Plus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 |||||| || || ||||| ||||| || || || || | ||| || | ||| ||||| Sbjct 5336836 GTGCGTTTCGCCCGTCGCGATCACGAAATCTTCCGGCCGCTCCTGCTGCATCATCAGCCA 5336895 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| ||||||||||| |||| |||||| |||||||||||||| | || | || || || Sbjct 5336896 CATCGCCTCGACGTAGTCCTTCGCGTGGCCCCAGTCGCGCTTCGAGTCGAGATTGCCCAG 5336955 Query 159078 CTCGATG-ACTTTTCCAGACTTTTTCCA--CTCAGCCAGACCGAGC--GTGATCTTGCGC 159132 ||| | | ||| | | | | | || ||| ||||||| ||||| |||||| Sbjct 5336956 CTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTGGCC--ACCGAGCGGGTGATTTTGCGC 5337013 Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192 ||||| || | | || || || |||||| || || ||||| ||||| | || ||| Sbjct 5337014 GTCACGAAGTTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCATTGCAGGCG 5337073 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG-AGAC 159251 |||| || || | ||||| || || | |||||||| || | | ||||| | || Sbjct 5337074 AACATGTCGTACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACATCTTGGCACAC 5337133 Query 159252 GCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 | |||| || || ||||| || || ||| || ||||| Sbjct 5337134 G-CGTACGGTGAGCGGGGATAGAACGGGGTCTTTTCGTTTTG 5337174 >seq7516 Length=3907879 Score = 161 bits (178), Expect = 1e-34 Identities = 292/421 (69%), Gaps = 17/421 (4%) Strand=Plus/Minus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | ||||| | ||| | | || |||||||||||||| ||||| Sbjct 2869515 CAGCTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCGTC 2869456 Query 152802 AAGATCCGCGTCGGTCATGATCATCA----GACG-ACCGTAGCG----CAGGTCA--CGT 152850 ||||| |||||||||||||||| | || |||| |||| |||||| | | Sbjct 2869455 CTGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGGAGCGTCTTCAGGTCGTCCAT 2869396 Query 152851 AGTGACCCGTAGACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATT 152908 |||| ||| ||| | ||| || || ||||||||||| | || ||| || || Sbjct 2869395 CGTGAG--GTACTTCTT--CTTGTACTGCAGGCCGAGGATCTTGATCAGATTGTTAATTT 2869340 Query 152909 CCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGA 152968 || |||| || | ||| || ||| || || || || || || |||| || || | Sbjct 2869339 CCGCATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACGTTCAGCAGCTTACCGCGCA 2869280 Query 152969 GTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTT 153028 | |||||||||||| ||| || ||| || || || | ||| |||| | || || | || Sbjct 2869279 GCGGAAACACGCCGTACGTGTCGCGCCCGACCACCCCCAGCCCGGACACGGCGAGCGTTT 2869220 Query 153029 TCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCC 153088 | |||||||| |||||||||| || ||||| |||| | | || | | ||||| Sbjct 2869219 TGGCCGAGTCTCCCTCGGTGAGGATGAGCGTGCAGTTGAGCGAGTTGCGCGAGCCGGCAT 2869160 Query 153089 AGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTT 153148 ||| ||||| || ||||| ||||| ||| ||||| | ||||| |||||| |||| Sbjct 2869159 CGTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGACTTCTTCGAGCCGGACGTTT 2869100 Query 153149 T 153149 | Sbjct 2869099 T 2869099 Score = 143 bits (158), Expect = 3e-29 Identities = 283/411 (69%), Gaps = 17/411 (4%) Strand=Plus/Minus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | |||||| | ||| | || ||||||||||| || || |||||| Sbjct 2869514 AGCTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCGTCC 2869455 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGGGAGTTA-- 118093 ||||| ||||||||||||||||| ||||||||| | ||| ||||| || Sbjct 2869454 TGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGGAGCGTCT-TCAGGTCGTCCAT 2869396 Query 118094 --TAA---ACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 | | || | | ||| || || ||||||||||| | || ||| || |||| | Sbjct 2869395 CGTGAGGTACTTCTTCTTGTACTGCAGGCCGAGGATCTTGATCAGATTGTTAATTTCCGC 2869336 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||| ||| | ||| || || || || || ||||| || ||||||| ||||| || Sbjct 2869335 ATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACGTTCAGCAGCTTACCGCGCAGCGG 2869276 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 ||||||||| || |||| || || || || | || |||| | || || | || || Sbjct 2869275 AAACACGCCGTACGTGTCGCGCCCGACCACCCCCAGCCCGGACACGGCGAGCGTTTTGGC 2869216 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323 |||||| |||||||| | || || ||||| | | | | |||| ||| ||||| Sbjct 2869215 CGAGTCTCCCTCGGTGAGGATGAGCGTGCAGTTGAGCGAGTTGCG-CGAG--CCGGCATC 2869159 Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || || || ||||||||||| | |||| | || |||||| || || || Sbjct 2869158 GTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGACTTCTTCGAGCC 2869108 Score = 120 bits (132), Expect = 3e-22 Identities = 283/424 (67%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 ||||||| |||||||| || || || || ||||| | |||||| | || || | || Sbjct 2870404 ACCCAGTGCCGATACCGTCGGCCCCGTTGATCAGCAGCATCGGAATGATCGGCAGATACC 2870345 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGAC--GTACTTGAGCACCGCATTGTCACT 117267 | | ||||| | || || || || || || ||||| ||||| || || ||| Sbjct 2870344 AAACCGGCTCGATGCGCTGATTATCCTC-GT-ACTGGTACTCGAGCAGCGGATCGTCGAG 2870287 Query 117268 CGGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGC 117327 ||||| ||| |||| | ||| || | || ||||| ||||| | | ||| || Sbjct 2870286 CGGATGGAAGATGTGCCGCGTCAGCGCGGACAGCATCGTGAAGATGTACCTGGGGCTGGC 2870227 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| | || ||||||||||| || || | ||| | || || || | Sbjct 2870226 GCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTGACCGCCCGGGTACAGCAGATTGAT 2870167 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 ||||||| ||| || |||| || |||| ||||| ||||| ||| | ||| Sbjct 2870166 GTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGTCGAGCAGAGCGACATCTC 2870107 Query 117448 ACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 || || || || || | || |||||||| | || |||||||| |||||||||| || Sbjct 2870106 GCCGTGATGGTAGGCGGACTTTTCCGCCACCGAACCGGCCAGCTGGGCCACCTTCACCTC 2870047 Query 117508 TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACC 117567 | | || ||||| ||| | || | |||||||||||| | ||||||| || Sbjct 2870046 GCGCTTGTCGTCTCGCTTGAAGCACGTGTACAGCACCTTGCGCTGGCCCGGCTTCAACCC 2869987 Query 117568 ATCC 117571 ||| Sbjct 2869986 GTCC 2869983 Score = 114 bits (126), Expect = 1e-20 Identities = 210/302 (70%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| | || |||||| ||||||||||| | ||||||||| || ||||| Sbjct 2870250 CGTGAAGATGTACCTGGGGCTGGCGCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTG 2870191 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || | || || |||| ||||||| ||| ||| | ||||| |||| || | Sbjct 2870190 ACCGCCCGGGTACAGCAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 2870131 Query 152148 AATCGTGCCCTGCAGA--CTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 ||||| | ||||| | || ||||| || || || | || ||||| | | Sbjct 2870130 GATCGT--CGAGCAGAGCGACATCTCGCCGTGATGGTAGGCGGACTTTTCCGCCACCGAA 2870073 Query 152206 CCCGCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAA 152263 || |||| ||| |||||||||| || || | ||| || ||||| || | ||| | Sbjct 2870072 CCGGCCAGCTGGGCCACCTTCACCTCGCGCTTGTC--GTCTCGCTTGAAGCACGTGTACA 2870015 Query 152264 TCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGT 152323 ||||||||||||| || ||||| ||||||| || | ||||| || ||| | ||| Sbjct 2870014 GCACCTTGCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGAATGGAGCGCACGTTGT 2869955 Query 152324 CC 152325 || Sbjct 2869954 CC 2869953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547144034255800