Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq7535 107 1e-18
seq7517 86.0 4e-12
>seq7535
Length=3646130
Score = 107 bits (118), Expect = 1e-18
Identities = 159/221 (72%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| ||| ||||| |||||| || |||||||| || || || || ||
Sbjct 875817 AGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 875876
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| || || ||||| | |||||||
Sbjct 875877 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 875936
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665
||||| |||| || | || || | ||| || || || | ||| ||||||| |
Sbjct 875937 TTGTCCTGGATC-TTCGCCTTCACATTCTCAATCGTATC--CGATGGCTCAACTTCCAGG 875993
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || ||||| | |||||||| |||||||||||
Sbjct 875994 GTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| ||| || ||| |||||| || |||||||| || || || || ||
Sbjct 876045 AGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 876104
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | |||||| || || ||||| | |||||||
Sbjct 876105 CCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 876164
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665
||||| |||| || | || || | ||| || || || | ||| || || | |
Sbjct 876165 TTGTCCTGGATC-TTCGCCTTCACATTCTCAATCGTATC--CGATGGCTCAACCTCGAGG 876221
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || ||||| | |||||||| |||||||||||
Sbjct 876222 GTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262
>seq7517
Length=11427604
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || | || |||||| || ||||| || || || || || ||
Sbjct 2898501 AGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGT 2898442
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || |||||||| || || |||||||| || || || || | ||||||
Sbjct 2898441 CCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 2898382
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | || ||||| ||| || |||| ||
Sbjct 2898381 TTGTCCTGGATC-TTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGT 2898323
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | ||| ||||| || ||||||||
Sbjct 2898322 GATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || | || |||||| || ||||| || || || | || ||
Sbjct 2898729 AGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGT 2898670
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || |||||||| || || |||||||| || || || || | ||||||
Sbjct 2898669 CCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 2898610
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | || ||||| ||| || |||| ||
Sbjct 2898609 TTGTCCTGGATC-TTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGT 2898551
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || | ||| ||||| || |||||||||
Sbjct 2898550 GATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 2898511
Score = 82.4 bits (90), Expect = 5e-11
Identities = 136/194 (70%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| || || || | || || ||||||| || || |||||||| ||
Sbjct 2898931 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAA 2898872
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| |||||||| || || || || | ||||||||||| |||| || | || |||
Sbjct 2898871 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGT 2898813
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || ||||| ||| || |||| || || || || || || | ||| ||||
Sbjct 2898812 TCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCA 2898753
Query 34694 CAAAAATCTGCATG 34707
| || |||||||||
Sbjct 2898752 CGAAGATCTGCATG 2898739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314689243895393
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |