Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7525 170 2e-37 seq7517 159 3e-34 seq7535 131 1e-25 seq7521 131 1e-25 >seq7525 Length=4038190 Score = 170 bits (188), Expect = 2e-37 Identities = 225/312 (72%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||||||| |||||||| |||| || | |||| | | || ||||| |||||| Sbjct 439806 ACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCAC 439865 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 || || |||||||||| ||||| |||||||| |||| ||| | | |||| | || Sbjct 439866 GGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGACGAAAACGCCCGAGGAA 439925 Query 135581 GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAAT 135640 ||||| | || || | | | || ||| ||||||| | ||||| || ||| | || Sbjct 439926 GCGCTTGAGACGGCGATCTATCTGAACGATCGCTACAGTCTGGATGGGCGGGATCCGAAC 439985 Query 135641 GGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGC 135700 || ||||| ||||| |||||||| || || | |||||||| || |||||||||||| Sbjct 439986 GGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGATCAGGGCTGGAAGGAGCGC 440045 Query 135701 AAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760 || | ||||| || ||||| || |||||||||||||| || | | ||||| || || Sbjct 440046 GAAATCTTTGGTAAAATTCGGTACATGAACTATGACGGATGCAAGCGTAAATTCAACGTG 440105 Query 135761 AATTTGTACGTG 135772 ||| || |||| Sbjct 440106 AATGCGTTCGTG 440117 >seq7517 Length=11427604 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || || || ||||| Sbjct 2898511 CATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTC 2898570 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || || || || ||||| || ||||| || || ||||| Sbjct 2898571 GGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 2898630 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | |||||| || || |||||||| | ||| | ||||| ||||| Sbjct 2898631 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACCTTGTCCGACTACAA 2898690 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||||| || ||||| | ||| |||| |||||||| Sbjct 2898691 CATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGCGGTGGCAT 2898741 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || || ||||| Sbjct 2898284 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 2898343 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || ||||| || || ||||| Sbjct 2898344 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 2898403 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || |||||||| | || | ||||| |||||| Sbjct 2898404 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAAC 2898463 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||||| || ||||| | ||| |||| |||||||| Sbjct 2898464 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGCGGTGGCAT 2898513 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || || || ||||| Sbjct 2898739 CATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTC 2898798 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || || || || ||||| || ||||| || || ||||| Sbjct 2898799 GGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 2898858 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | |||||| || || |||||||| | ||| | ||||| ||||| Sbjct 2898859 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACCTTGTCCGACTACAA 2898918 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||||||| Sbjct 2898919 CATCCAGAAGGAGTCGACC 2898937 >seq7535 Length=3646130 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||||||||| ||| | || || || ||||| || || || Sbjct 876034 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCG 875975 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || || || || ||||| || || || || || ||||| Sbjct 875974 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 875915 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || | ||| | || || || ||| Sbjct 875914 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 875855 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| ||||| | ||| |||| |||||||| Sbjct 875854 ATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGTCTGCGTGGTGGCAT 875805 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||||||||| ||| | || || || || || || || || Sbjct 876262 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCG 876203 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || || || || ||||| || || || || || ||||| Sbjct 876202 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 876143 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || |||| || | ||| | || || || ||| Sbjct 876142 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 876083 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| ||||| | ||| |||| ||||| || Sbjct 876082 ATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGTAT 876033 >seq7521 Length=12184106 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 8321118 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 8321177 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| ||||| || || || ||||| Sbjct 8321178 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCGCCAGATCAG 8321237 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||| |||||| Sbjct 8321238 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAAC 8321297 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| |||| |||| |||| ||||| Sbjct 8321298 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 8321344 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||||||| | || || ||||| || || || || Sbjct 9381346 CATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTC 9381287 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || ||| || || ||||| |||||||| || || ||||| Sbjct 9381286 GGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 9381227 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || || || | ||||| ||||| Sbjct 9381226 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAA 9381167 Query 27167 CATTCAAAAGG 27177 |||||| |||| Sbjct 9381166 CATTCAGAAGG 9381156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434861202793920