Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_028696.2
Length=41338
Score E
Sequences producing significant alignments: (Bits) Value
seq92 235 1e-57
seq7904 161 3e-35
>seq92
Length=1234
Score = 235 bits (260), Expect = 1e-57
Identities = 335/467 (72%), Gaps = 6/467 (1%)
Strand=Plus/Plus
Query 17539 ACGGTTTTTCCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAGAGTGGC 17598
|||| | | ||| ||| ||| ||||| || |||||| | || | ||||| | |
Sbjct 85 ACGGCTGTGCCAATATCGGTAACTGCTACGGTGGACCTCAAAGAGTTGGCATAACGCTTT 144
Query 17599 CACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATC 17658
|| |||||| |||| || | ||| | ||||| ||| |||||| ||||| ||||||
Sbjct 145 AACGGGATAAAGCGCGCTCAATTTGTTAACTATCGCGAATTGTTCAACGAGTCCGACATC 204
Query 17659 AAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTAGCTTTTTC 17718
|||||||||||||||||||||| || || ||||||||||||| |||||||| ||||
Sbjct 205 AAGAGCGCGGTAGCCTTTTTTAGAATATCGTTTTCCATTTCAAGACGTTGTATTCTTTTT 264
Query 17719 CTGAGCTCACGGATTTCAATTTGTTCCGGGGT-AATGGGGGAGGCTTTTGGTGTTTTGCC 17777
| | ||||| | ||| | || || || || ||||| | | || | ||||||
Sbjct 265 TTCATTTCACGTAGTTCGTTCTGCTCGGGTGTCAATGGCAG-CCCAGCAGGCGCTTTGCC 323
Query 17778 CTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACATCCAT 17837
|| || ||| ||| | | |||||||| || |||| | |||||| ||| | |||
Sbjct 324 TTGACGTTCAAGACGGAGCTTGTTCACCCAGCGAGTCAAAGCAGAAAGGATGACGTTCAT 383
Query 17838 AGCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCG 17897
|| | ||||| ||| | | |||||| | ||||||||| ||||| | || | ||| |
Sbjct 384 CGCCTTTGCTGCCTCTACAAAGGTGTATTGCTGGTCAACAACCAGCTTGGCTGCTTCAAG 443
Query 17898 TTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTT-CTGAGGTG 17956
|||||| ||||| |||||| ||| ||| | ||||||| ||| ||||| |
Sbjct 444 TTTAAATTCTGCTGTGAAAT---GTTTACCCATCGTATCACCTGTAACGTTATTGAGGAG 500
Query 17957 AGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCAA 18003
|| |||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 501 AGGATATCACCTCTGGTCAGGTGGCCAAATTCATTAAACCACTACAA 547
Score = 233 bits (258), Expect = 5e-57
Identities = 334/466 (72%), Gaps = 6/466 (1%)
Strand=Plus/Plus
Query 40164 ACGGTTTTTCCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAGAGTGGC 40223
|||| | | ||| ||| ||| ||||| || |||||| | || | ||||| | |
Sbjct 85 ACGGCTGTGCCAATATCGGTAACTGCTACGGTGGACCTCAAAGAGTTGGCATAACGCTTT 144
Query 40224 CACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATC 40283
|| |||||| |||| || | ||| | ||||| ||| |||||| ||||| ||||||
Sbjct 145 AACGGGATAAAGCGCGCTCAATTTGTTAACTATCGCGAATTGTTCAACGAGTCCGACATC 204
Query 40284 AAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTAGCTTTTTC 40343
|||||||||||||||||||||| || || ||||||||||||| |||||||| ||||
Sbjct 205 AAGAGCGCGGTAGCCTTTTTTAGAATATCGTTTTCCATTTCAAGACGTTGTATTCTTTTT 264
Query 40344 CTGAGCTCACGGATTTCAATTTGTTCCGGGGT-AATGGGGGAGGCTTTTGGTGTTTTGCC 40402
| | ||||| | ||| | || || || || ||||| | | || | ||||||
Sbjct 265 TTCATTTCACGTAGTTCGTTCTGCTCGGGTGTCAATGGCAG-CCCAGCAGGCGCTTTGCC 323
Query 40403 CTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACATCCAT 40462
|| || ||| ||| | | |||||||| || |||| | |||||| ||| | |||
Sbjct 324 TTGACGTTCAAGACGGAGCTTGTTCACCCAGCGAGTCAAAGCAGAAAGGATGACGTTCAT 383
Query 40463 AGCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCG 40522
|| | ||||| ||| | | |||||| | ||||||||| ||||| | || | ||| |
Sbjct 384 CGCCTTTGCTGCCTCTACAAAGGTGTATTGCTGGTCAACAACCAGCTTGGCTGCTTCAAG 443
Query 40523 TTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTT-CTGAGGTG 40581
|||||| ||||| |||||| ||| ||| | ||||||| ||| ||||| |
Sbjct 444 TTTAAATTCTGCTGTGAAAT---GTTTACCCATCGTATCACCTGTAACGTTATTGAGGAG 500
Query 40582 AGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCA 40627
|| |||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 501 AGGATATCACCTCTGGTCAGGTGGCCAAATTCATTAAACCACTACA 546
>seq7904
Length=1064
Score = 161 bits (178), Expect = 3e-35
Identities = 231/323 (72%), Gaps = 3/323 (1%)
Strand=Plus/Minus
Query 16752 TTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATC-GATTTTCC 16810
||| |||||||||| || | ||||||||| ||||| | || | | | | | |||
Sbjct 321 TTGTAGTGGTCAACTAATATTGGCCACCGCATTAGACTGTT--CATGGAACAGCCGTTCT 264
Query 16811 GATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCA 16870
||||| ||||| | ||| || || || || || ||||| ||| | |||||||| ||
Sbjct 263 GATTCATTTGGCGTTAAGCCGCCGTTGTACCAATGGGGTCTCAGTTCACTGTAATACCCT 204
Query 16871 ACGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGC 16930
||||||||| || || || | || ||| | | |||| ||| ||| | | ||
Sbjct 203 ACGATATAGCGGGTAATCGCATTTTTAGCCTCGATAACGCTTTGATAACCCCTGGTGGGG 144
Query 16931 ACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTT 16990
| ||||||| | |||| ||||||||||| || ||||| ||||| |||||||| |||||
Sbjct 143 AACCATTCGGTTTTCAAGCTCCTGAAGAACCGTTCCATCGGGCTATTATCCCAACAGTTA 84
Query 16991 CCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTG 17050
|| |||||||||||||||||| | ||| | | | |||||| ||| ||| | | | |
Sbjct 83 CCGCGCCGACTCATACTCTGCTTAATCTGACAACGCCACAGCGCCTGGCGGTATTTACGG 24
Query 17051 CTCGTATAATGACTGCCTTGATC 17073
|| ||||| || || || |||||
Sbjct 23 CTGGTATAGTGGCTTCCCTGATC 1
Score = 159 bits (176), Expect = 9e-35
Identities = 230/322 (71%), Gaps = 3/322 (1%)
Strand=Plus/Minus
Query 39378 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATC-GATTTTCCG 39436
|| |||||||||| || | ||||||||| ||||| | || | | | | | ||| |
Sbjct 320 TGTAGTGGTCAACTAATATTGGCCACCGCATTAGACTGTT--CATGGAACAGCCGTTCTG 263
Query 39437 ATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 39496
|||| ||||| | ||| || || || || || ||||| ||| | |||||||| || |
Sbjct 262 ATTCATTTGGCGTTAAGCCGCCGTTGTACCAATGGGGTCTCAGTTCACTGTAATACCCTA 203
Query 39497 CGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCA 39556
|||||||| || || || | || ||| | | |||| ||| ||| | | || |
Sbjct 202 CGATATAGCGGGTAATCGCATTTTTAGCCTCGATAACGCTTTGATAACCCCTGGTGGGGA 143
Query 39557 CCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTC 39616
||||||| | |||| ||||||||||| || ||||| ||||| |||||||| ||||| |
Sbjct 142 ACCATTCGGTTTTCAAGCTCCTGAAGAACCGTTCCATCGGGCTATTATCCCAACAGTTAC 83
Query 39617 CACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGC 39676
| |||||||||||||||||| | ||| | | | |||||| ||| ||| | | | ||
Sbjct 82 CGCGCCGACTCATACTCTGCTTAATCTGACAACGCCACAGCGCCTGGCGGTATTTACGGC 23
Query 39677 TCGTATAATGACTGCCTTGATC 39698
| ||||| || || || |||||
Sbjct 22 TGGTATAGTGGCTTCCCTGATC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132143488342600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |