Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq92 235 1e-57 seq7904 161 3e-35 >seq92 Length=1234 Score = 235 bits (260), Expect = 1e-57 Identities = 335/467 (72%), Gaps = 6/467 (1%) Strand=Plus/Plus Query 17539 ACGGTTTTTCCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAGAGTGGC 17598 |||| | | ||| ||| ||| ||||| || |||||| | || | ||||| | | Sbjct 85 ACGGCTGTGCCAATATCGGTAACTGCTACGGTGGACCTCAAAGAGTTGGCATAACGCTTT 144 Query 17599 CACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATC 17658 || |||||| |||| || | ||| | ||||| ||| |||||| ||||| |||||| Sbjct 145 AACGGGATAAAGCGCGCTCAATTTGTTAACTATCGCGAATTGTTCAACGAGTCCGACATC 204 Query 17659 AAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTAGCTTTTTC 17718 |||||||||||||||||||||| || || ||||||||||||| |||||||| |||| Sbjct 205 AAGAGCGCGGTAGCCTTTTTTAGAATATCGTTTTCCATTTCAAGACGTTGTATTCTTTTT 264 Query 17719 CTGAGCTCACGGATTTCAATTTGTTCCGGGGT-AATGGGGGAGGCTTTTGGTGTTTTGCC 17777 | | ||||| | ||| | || || || || ||||| | | || | |||||| Sbjct 265 TTCATTTCACGTAGTTCGTTCTGCTCGGGTGTCAATGGCAG-CCCAGCAGGCGCTTTGCC 323 Query 17778 CTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACATCCAT 17837 || || ||| ||| | | |||||||| || |||| | |||||| ||| | ||| Sbjct 324 TTGACGTTCAAGACGGAGCTTGTTCACCCAGCGAGTCAAAGCAGAAAGGATGACGTTCAT 383 Query 17838 AGCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCG 17897 || | ||||| ||| | | |||||| | ||||||||| ||||| | || | ||| | Sbjct 384 CGCCTTTGCTGCCTCTACAAAGGTGTATTGCTGGTCAACAACCAGCTTGGCTGCTTCAAG 443 Query 17898 TTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTT-CTGAGGTG 17956 |||||| ||||| |||||| ||| ||| | ||||||| ||| ||||| | Sbjct 444 TTTAAATTCTGCTGTGAAAT---GTTTACCCATCGTATCACCTGTAACGTTATTGAGGAG 500 Query 17957 AGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCAA 18003 || |||||||||||| ||||||||||||||||| ||||||||| ||| Sbjct 501 AGGATATCACCTCTGGTCAGGTGGCCAAATTCATTAAACCACTACAA 547 Score = 233 bits (258), Expect = 5e-57 Identities = 334/466 (72%), Gaps = 6/466 (1%) Strand=Plus/Plus Query 40164 ACGGTTTTTCCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAGAGTGGC 40223 |||| | | ||| ||| ||| ||||| || |||||| | || | ||||| | | Sbjct 85 ACGGCTGTGCCAATATCGGTAACTGCTACGGTGGACCTCAAAGAGTTGGCATAACGCTTT 144 Query 40224 CACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATC 40283 || |||||| |||| || | ||| | ||||| ||| |||||| ||||| |||||| Sbjct 145 AACGGGATAAAGCGCGCTCAATTTGTTAACTATCGCGAATTGTTCAACGAGTCCGACATC 204 Query 40284 AAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTAGCTTTTTC 40343 |||||||||||||||||||||| || || ||||||||||||| |||||||| |||| Sbjct 205 AAGAGCGCGGTAGCCTTTTTTAGAATATCGTTTTCCATTTCAAGACGTTGTATTCTTTTT 264 Query 40344 CTGAGCTCACGGATTTCAATTTGTTCCGGGGT-AATGGGGGAGGCTTTTGGTGTTTTGCC 40402 | | ||||| | ||| | || || || || ||||| | | || | |||||| Sbjct 265 TTCATTTCACGTAGTTCGTTCTGCTCGGGTGTCAATGGCAG-CCCAGCAGGCGCTTTGCC 323 Query 40403 CTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACATCCAT 40462 || || ||| ||| | | |||||||| || |||| | |||||| ||| | ||| Sbjct 324 TTGACGTTCAAGACGGAGCTTGTTCACCCAGCGAGTCAAAGCAGAAAGGATGACGTTCAT 383 Query 40463 AGCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCG 40522 || | ||||| ||| | | |||||| | ||||||||| ||||| | || | ||| | Sbjct 384 CGCCTTTGCTGCCTCTACAAAGGTGTATTGCTGGTCAACAACCAGCTTGGCTGCTTCAAG 443 Query 40523 TTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTT-CTGAGGTG 40581 |||||| ||||| |||||| ||| ||| | ||||||| ||| ||||| | Sbjct 444 TTTAAATTCTGCTGTGAAAT---GTTTACCCATCGTATCACCTGTAACGTTATTGAGGAG 500 Query 40582 AGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCA 40627 || |||||||||||| ||||||||||||||||| ||||||||| || Sbjct 501 AGGATATCACCTCTGGTCAGGTGGCCAAATTCATTAAACCACTACA 546 >seq7904 Length=1064 Score = 161 bits (178), Expect = 3e-35 Identities = 231/323 (72%), Gaps = 3/323 (1%) Strand=Plus/Minus Query 16752 TTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATC-GATTTTCC 16810 ||| |||||||||| || | ||||||||| ||||| | || | | | | | ||| Sbjct 321 TTGTAGTGGTCAACTAATATTGGCCACCGCATTAGACTGTT--CATGGAACAGCCGTTCT 264 Query 16811 GATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCA 16870 ||||| ||||| | ||| || || || || || ||||| ||| | |||||||| || Sbjct 263 GATTCATTTGGCGTTAAGCCGCCGTTGTACCAATGGGGTCTCAGTTCACTGTAATACCCT 204 Query 16871 ACGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGC 16930 ||||||||| || || || | || ||| | | |||| ||| ||| | | || Sbjct 203 ACGATATAGCGGGTAATCGCATTTTTAGCCTCGATAACGCTTTGATAACCCCTGGTGGGG 144 Query 16931 ACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTT 16990 | ||||||| | |||| ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 143 AACCATTCGGTTTTCAAGCTCCTGAAGAACCGTTCCATCGGGCTATTATCCCAACAGTTA 84 Query 16991 CCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTG 17050 || |||||||||||||||||| | ||| | | | |||||| ||| ||| | | | | Sbjct 83 CCGCGCCGACTCATACTCTGCTTAATCTGACAACGCCACAGCGCCTGGCGGTATTTACGG 24 Query 17051 CTCGTATAATGACTGCCTTGATC 17073 || ||||| || || || ||||| Sbjct 23 CTGGTATAGTGGCTTCCCTGATC 1 Score = 159 bits (176), Expect = 9e-35 Identities = 230/322 (71%), Gaps = 3/322 (1%) Strand=Plus/Minus Query 39378 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATC-GATTTTCCG 39436 || |||||||||| || | ||||||||| ||||| | || | | | | | ||| | Sbjct 320 TGTAGTGGTCAACTAATATTGGCCACCGCATTAGACTGTT--CATGGAACAGCCGTTCTG 263 Query 39437 ATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 39496 |||| ||||| | ||| || || || || || ||||| ||| | |||||||| || | Sbjct 262 ATTCATTTGGCGTTAAGCCGCCGTTGTACCAATGGGGTCTCAGTTCACTGTAATACCCTA 203 Query 39497 CGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCA 39556 |||||||| || || || | || ||| | | |||| ||| ||| | | || | Sbjct 202 CGATATAGCGGGTAATCGCATTTTTAGCCTCGATAACGCTTTGATAACCCCTGGTGGGGA 143 Query 39557 CCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTC 39616 ||||||| | |||| ||||||||||| || ||||| ||||| |||||||| ||||| | Sbjct 142 ACCATTCGGTTTTCAAGCTCCTGAAGAACCGTTCCATCGGGCTATTATCCCAACAGTTAC 83 Query 39617 CACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGC 39676 | |||||||||||||||||| | ||| | | | |||||| ||| ||| | | | || Sbjct 82 CGCGCCGACTCATACTCTGCTTAATCTGACAACGCCACAGCGCCTGGCGGTATTTACGGC 23 Query 39677 TCGTATAATGACTGCCTTGATC 39698 | ||||| || || || ||||| Sbjct 22 TGGTATAGTGGCTTCCCTGATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132143488342600