Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq236 114 1e-20 >seq236 Length=1144 Score = 114 bits (126), Expect = 1e-20 Identities = 234/348 (67%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 142918 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 142977 |||||| || ||||| |||| ||||||| |||||| || || || | || ||||| Sbjct 1144 TTTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGC 1085 Query 142978 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACTGCAGTCTGGAAATGCTTCCAGAA 143037 || ||||| | || || || || || ||||| || || |||||||||||||| |||| Sbjct 1084 ACCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAA 1025 Query 143038 TGGAATAACACCGGTATGTTTGACTTCACCCATACCAATACGAGAACCTTCAGCACGAAT 143097 ||||| |||||||| |||| || | ||| | ||| ||||| || Sbjct 1024 CGGAATGCAGCCGGTATGGAAAGCTTCTCCACCGCGAATCGGGCTACCCAACGCACGGAT 965 Query 143098 CATACCAACGTTGATACCAATACCTGCACGTTTAGAAATATACTCGATTATTGAGTTAGC 143157 || ||||||| || || || ||||||| |||| || | | || | | | | Sbjct 964 GCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCTTGA 905 Query 143158 AGTTTTATTAATTGATTTCAGCGAGTCACCTGCTTCAATAACAACGCAAGAACTAAACTG 143217 || |||||| || | ||| ||||| ||| || | || || || || ||||| Sbjct 904 GGTGGCATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCTGAACTG 845 Query 143218 ACGGGTCGGGGTACGAGCACCAGCCATAATAGGAGTAGGCAATGAAAT 143265 |||||| || ||||| | |||| ||| || || ||||||| ||||| Sbjct 844 ACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGAGAAAT 797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545313874976280