Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq236 194 2e-44 >seq236 Length=1144 Score = 194 bits (214), Expect = 2e-44 Identities = 249/342 (73%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 77243 TTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGC 77302 |||||| ||||||||| |||| ||||||| |||||| ||||| || ||||||| ||||| Sbjct 1144 TTTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGC 1085 Query 77303 ACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAA 77362 ||||||||| ||||| || || || |||||||| || || ||||| | ||| || |||| Sbjct 1084 ACCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAA 1025 Query 77363 CGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAAT 77422 ||| || ||| ||||| | ||||| ||||| || || ||||| || || || Sbjct 1024 CGGAATGCAGCCGGTATGGAAAGCTTCTCCACCGCGAATCGGGCTACCCAACGCACGGAT 965 Query 77423 GTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCACGATCGC---AGA 77479 | | || || || | ||||| ||||| ||||| |||| || ||||| || || || Sbjct 964 GCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCTTGA 905 Query 77480 GGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAA 77539 ||| ||||| | ||| |||| |||||| |||| |||| || || | || Sbjct 904 GGT---GGCATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCTGAA 848 Query 77540 CTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGG 77581 |||||| || || |||||||| || | ||| || |||||||| Sbjct 847 CTGACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGG 806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568398838615680