Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_029042.1 Length=156833 Score E Sequences producing significant alignments: (Bits) Value seq236 114 1e-20 >seq236 Length=1144 Score = 114 bits (126), Expect = 1e-20 Identities = 200/286 (70%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 102611 TCTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGT 102670 ||| || || || || ||||| ||||| || || || ||||| ||||||||||| ||||| Sbjct 802 TCTGCCTACGCCAATCATGTCTGGCGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGT 861 Query 102671 ATTGATC-AAACTGGTGACACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGA 102729 ||||| || |||||| | |||| || ||||||||||| | | ||| ||| | Sbjct 862 GCTGATCGAATGTGGTGATAGCCTGGATTCGATTAATGCCACCTCAAGCGCCATTGTGAA 921 Query 102730 TTATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATTGGTAG 102789 || |||||| ||||||| || ||||| || | | || || |||| | ||||| Sbjct 922 ATACGTTTCCCAACGTGCGGGGATCGGCATCAACGCGGGCCGCATCCGTGCGTTGGGTAG 981 Query 102790 CCCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCCATTCATCAAGTATTT-- 102846 ||| || || || ||| ||||||| || ||| |||| ||| |||| |||| Sbjct 982 CCCGATTCGCGGTGGAGAAGCTTTCCATACCGG-CTGCATTCCGTTCTACAAGCATTTCC 1040 Query 102847 -GACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGG 102891 ||| ||| | || || |||||||| ||||| | |||||||| Sbjct 1041 AGAC---CGCCGTAAAATCCTGCTCTCAGGGCGGCGTGCGTGGTGG 1083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501671615233880