Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq236 105 7e-18 >seq236 Length=1144 Score = 105 bits (116), Expect = 7e-18 Identities = 255/382 (67%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 41873 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCAACCCCAATTATGGCAGG 41931 ||||| ||||| ||| ||||||| | |||| |||| |||| || ||||| ||| | || Sbjct 767 CGTTTCTATGACGCCATTTCTAC-CTTCAAAATTTCTCTGCCTACGCCAATCATGTCTGG 825 Query 41932 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 41991 | ||||| || || || |||||| ||||| | || ||| |||||| | Sbjct 826 CGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTGCTGATCGAATGTGGTGATAGCCT 885 Query 41992 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 42051 | || ||||| || ||| | ||| | |||| |||| |||| || || || Sbjct 886 GGATTCGATTAATGCCACCTCAAGCGCCATTGTGAAATACGTTTCCCAACGTGCGGGGAT 945 Query 42052 CGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGAT---CGGTATGGGTGAAGT 42108 ||| ||||||| || | ||||| ||| ||| |||| || |||| Sbjct 946 CGGCATCAACGCGGGCCGCATCCGTGCGTTGGGTAGCCCGATTCGCGGT---GGAGAAGC 1002 Query 42109 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 42168 | ||||| || ||||| |||| || |||||||| || || |||||||| || || Sbjct 1003 TTTCCATACCGGCTGCATTCCGTTCTACAAGCATTTCCAGACCGCCGTAAAATCCTGCTC 1062 Query 42169 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 42228 ||| || || | |||||||||||||| || || || ||||||||||| | ||||| Sbjct 1063 TCAGGGCGGCGTGCGTGGTGGTGCTGCCACGTTGTTCTACCCGATGTGGCATCTGGAAGT 1122 Query 42229 AGAGAACCTATTAGTTCTGAAA 42250 || | ||| | || |||||| Sbjct 1123 CGAAAGCCTGCTGGTGCTGAAA 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539868191245960