Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq7521 107 1e-18
seq7535 98.7 7e-16
>seq7521
Length=12184106
Score = 107 bits (118), Expect = 1e-18
Identities = 146/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| |||||||||||||| || || || || || || || || ||
Sbjct 8321115 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 8321174
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
|||| || | || ||| | || | || | | ||||| ||||| | ||||||||
Sbjct 8321175 TCGGATACGATCGAGAATGTGAAGGCGAAGA-TCCAGGACAAGGAAGGAATCCCGCCAGA 8321233
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||| | || || |||||||| || ||||| || | ||||| | ||| ||
Sbjct 8321234 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTA 8321293
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||| ||
Sbjct 8321294 CAACATCCAGAAGGAGTCGAC 8321314
Score = 105 bits (116), Expect = 5e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| ||||| ||||| || || || ||||| || || || || |
Sbjct 9381348 AACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCT 9381289
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
||||||| | || ||| | || | ||| || ||||| ||||| | || |||||
Sbjct 9381288 TCGGACACGATCGAGAATGTGAAGGC-AAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 9381230
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||| | || || |||||||| || ||||| || | |||||| | ||| ||
Sbjct 9381229 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 9381170
Query 23787 CAACATACAAAA 23798
|||||| || ||
Sbjct 9381169 CAACATTCAGAA 9381158
>seq7535
Length=3646130
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| ||||| || || ||||| || ||||| || |||||||| | ||
Sbjct 876034 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCG 875975
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || || ||||| || || | |||||||||||
Sbjct 875974 GATACGATTGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 875916
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || ||||| || || ||||| || | ||||| | || || ||
Sbjct 875915 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 875856
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || ||||| || | ||| | |||
Sbjct 875855 CATCCAGAAGGAGTCTACTCTTCATCTGGTT 875825
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| ||||| || || ||||| || ||||| ||||| ||||| | ||
Sbjct 876262 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCG 876203
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || || ||||| || || | |||||||||||
Sbjct 876202 GATACGATTGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 876144
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || || || || ||||| || | ||||| | || || ||
Sbjct 876143 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 876084
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || |||||||| | ||| | |||
Sbjct 876083 CATCCAGAAGGAGTCCACCCTTCATCTGGTT 876053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337966258824668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |