Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7521 125 2e-23 seq7535 116 9e-21 seq7901 89.7 1e-12 >seq7521 Length=12184106 Score = 125 bits (138), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || || || || |||| ||||| |||| || || Sbjct 8321338 CGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTG 8321279 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| || || || || || ||||| || ||| Sbjct 8321278 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCT 8321219 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||||| ||||| || || |||| || || || | Sbjct 8321218 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGG 8321159 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| ||||| | ||||| | ||| | ||||| || Sbjct 8321158 GTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 8321115 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| |||| | ||| | ||||| || |||||||| || |||||||| || || || Sbjct 9381167 TTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGC 9381226 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 || || || ||||| ||||||||||| ||||||||| ||||||| ||||| ||||| Sbjct 9381227 TGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCC 9381286 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || | || || || | ||||| |||||||| || | ||||| | ||| | ||||| Sbjct 9381287 GAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 9381346 Query 225715 TT 225716 || Sbjct 9381347 TT 9381348 >seq7535 Length=3646130 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || ||||| || || |||| || || || | || || | ||||| Sbjct 876051 AGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 876110 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || ||||| || || |||||||| Sbjct 876111 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 876170 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || || || || | || || || | ||||| ||| Sbjct 876171 TGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCGAGGGTGATGGTC 876230 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| |||||| | ||| | ||||| Sbjct 876231 TTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262 Score = 91.5 bits (100), Expect = 4e-13 Identities = 130/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || ||||| || |||| || || || | || || | ||||| Sbjct 876279 AGAACCAGATGAAGGGTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 876338 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || ||||| || || |||||||| Sbjct 876339 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 876398 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || || || || || | || || || | ||||| ||| Sbjct 876399 TGGATCTTCGCCTTCACGTTCTCAATCGTATCCGATGGCTCAACTTC-GAGGTGATGGTC 876457 Query 225682 TT 225683 || Sbjct 876458 TT 876459 >seq7901 Length=80373 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||| |||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 37042 TGAGAGGATGATCCGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 37100 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| |||| || ||||||||||| |||| ||||| || Sbjct 37101 CAGTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAG 37140 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| || || ||||| ||| |||||| |||||| |||||||||| | | | Sbjct 37730 GGTAAGGTTTTTCGCGTTGCATCGAATTAATCCACATCATCCACCGCTTGTGCGGGTCCC 37671 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCG 7855 ||||| || ||||||||||||||||||||| |||| | | |||| || | || |||| Sbjct 37670 CGTCAATTCCTTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCAACTTCTCGCG 37611 Query 7856 TTAGCT 7861 |||||| Sbjct 37610 TTAGCT 37605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192370446421574