Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq236 105 7e-18 >seq236 Length=1144 Score = 105 bits (116), Expect = 7e-18 Identities = 255/382 (67%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 61696 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 61754 ||||| ||||| ||| ||||||| | |||| |||| ||||||| ||||| ||| | || Sbjct 767 CGTTTCTATGACGCCATTTCTAC-CTTCAAAATTTCTCTGCCTACGCCAATCATGTCTGG 825 Query 61755 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 61814 | ||||| || || || |||||| ||||| | || ||| |||||| | Sbjct 826 CGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTGCTGATCGAATGTGGTGATAGCCT 885 Query 61815 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 61874 | || ||||| || ||| | ||| | |||| |||| |||| || || || Sbjct 886 GGATTCGATTAATGCCACCTCAAGCGCCATTGTGAAATACGTTTCCCAACGTGCGGGGAT 945 Query 61875 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGAT---CGGTATGGGCGAAGT 61931 || ||||||| || | ||||| ||| ||| |||| || |||| Sbjct 946 CGGCATCAACGCGGGCCGCATCCGTGCGTTGGGTAGCCCGATTCGCGGT---GGAGAAGC 1002 Query 61932 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 61991 | ||||| || ||||| |||| || |||||||| || || |||||||| || || Sbjct 1003 TTTCCATACCGGCTGCATTCCGTTCTACAAGCATTTCCAGACCGCCGTAAAATCCTGCTC 1062 Query 61992 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 62051 ||| || || | |||||||||||||| || || || ||||||||||| | ||||| Sbjct 1063 TCAGGGCGGCGTGCGTGGTGGTGCTGCCACGTTGTTCTACCCGATGTGGCATCTGGAAGT 1122 Query 62052 AGAGAACCTATTAGTTCTGAAA 62073 || | ||| | || |||||| Sbjct 1123 CGAAAGCCTGCTGGTGCTGAAA 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542587833531960