Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_031934.1 Length=168929 Score E Sequences producing significant alignments: (Bits) Value seq236 122 9e-23 >seq236 Length=1144 Score = 122 bits (134), Expect = 9e-23 Identities = 235/347 (68%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 142517 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 142576 |||||| || ||||| |||| ||||||| |||||| || || || | || ||||| Sbjct 1144 TTTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGC 1085 Query 142577 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAA 142636 || ||||| | || || || || || ||||| || || ||||||||||| || |||| Sbjct 1084 ACCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAA 1025 Query 142637 TGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAAT 142696 ||||| |||||||| |||| || || ||| | ||| ||||| || Sbjct 1024 CGGAATGCAGCCGGTATGGAAAGCTTCTCCACCGCGAATCGGGCTACCCAACGCACGGAT 965 Query 142697 CATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTAGC 142756 || ||||||| || || || ||||||| |||| ||||| | || | | | | Sbjct 964 GCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCTTGA 905 Query 142757 AGTTTTGTTAATAGATTTCAGCGAGTCGCCGGCTTCAATAACCACACAAGAACTAAATTG 142816 || ||||| || | ||| || || ||| || | |||||| || || || || Sbjct 904 GGTGGCATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCTGAACTG 845 Query 142817 ACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTAGGCAATGAAA 142863 ||||||||| ||||| | |||| ||| || || ||||||| |||| Sbjct 844 ACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGAGAAA 798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540373724753240