Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7535 152 1e-31 seq7521 141 2e-28 seq7517 132 1e-25 >seq7535 Length=3646130 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || ||||| || |||||||||||||| || || || Sbjct 876259 CAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCGGAT 876200 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| |||||||| || |||||||| || || ||||| Sbjct 876199 ACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 876140 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||||| || ||||| | || || | || |||||| || Sbjct 876139 CGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATC 876080 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 876079 CAGAAGGAGTCCACCCTTCATCTGGTT 876053 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || ||||| || |||||||| || || || || || Sbjct 876031 CAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCGGAT 875972 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| |||||||| || |||||||| || || ||||| Sbjct 875971 ACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 875912 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || ||||| | || || | || |||||| || Sbjct 875911 CGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATC 875852 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 875851 CAGAAGGAGTCTACTCTTCATCTGGTT 875825 >seq7521 Length=12184106 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || || ||||| ||||| || ||| || Sbjct 8321121 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 8321180 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| ||||||||||| || || ||||| Sbjct 8321181 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCGCCAGATCAGCAG 8321240 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || |||| || ||| || Sbjct 8321241 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAACATC 8321300 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 8321301 CAGAAGGAGTCGACCCTTCATCTGGT 8321326 Score = 136 bits (150), Expect = 1e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 9381342 CAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGAC 9381283 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||| |||||||| ||||| || || || || ||||| Sbjct 9381282 ACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 9381223 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | ||||| |||| || ||| | Sbjct 9381222 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAACATT 9381163 Query 178104 CAAAA 178108 || || Sbjct 9381162 CAGAA 9381158 >seq7517 Length=11427604 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 2898287 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGAC 2898346 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || ||||| || ||||| Sbjct 2898347 ACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAG 2898406 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| ||||| ||| | ||||| |||| || ||| || Sbjct 2898407 CGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAACATC 2898466 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 2898467 CAGAAGGAGTCGACCTTGCA-CTTG 2898490 Score = 127 bits (140), Expect = 5e-24 Identities = 154/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 2898515 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGAC 2898574 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || ||||| || ||||| Sbjct 2898575 ACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAG 2898634 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| || ||||| ||||| ||| | || |||| |||| || ||| | Sbjct 2898635 CGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTAC-CTTGTCCGACTACAACAT 2898693 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || |||| |||| Sbjct 2898694 CCAGAAGGAGTCGACCTTGCA-CTTG 2898718 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 2898743 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCGGAC 2898802 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || || ||||| || ||||| Sbjct 2898803 ACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAG 2898862 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| || ||||| ||||| ||| | || |||| |||| || ||| | Sbjct 2898863 CGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTAC-CTTGTCCGACTACAACAT 2898921 Query 178103 CCAAAAAGAATCAAC 178117 ||| || || || || Sbjct 2898922 CCAGAAGGAGTCGAC 2898936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203568936658074