Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2173 279 6e-70 >seq2173 Length=41539 Score = 279 bits (308), Expect = 6e-70 Identities = 1180/1855 (64%), Gaps = 34/1855 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 ||||| ||||| || | ||||||||| || || || || || | |||| ||| || Sbjct 18542 GCGGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 18483 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 ||||| || || ||| || |||| || || | ||||| || | || || Sbjct 18482 TGCATCGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 18423 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 || |||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 18422 TGGTCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 18363 Query 53009 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATA 53062 |||| ||||| || | |||| | | |||| | | |||| | ||||| || Sbjct 18362 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTA---TTTGCTCGATGTTCTGGATC 18306 Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 || || | ||| || | ||||| || ||||| | ||| | | ||| Sbjct 18305 GAGCCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTC 18246 Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182 | | | | | || || | || || || ||||| || || |||| || | ||| || Sbjct 18245 AGATCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTG 18186 Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 |||| || |||||||| || | ||||| || || ||||||||||| || || || Sbjct 18185 TAAACGTTGGACGTATACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAA 18126 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 || |||||||| || || | || | || | | ||||| | | || || || Sbjct 18125 GCCGTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCC 18066 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362 || || | |||||||||| || |||| |||||| || ||| Sbjct 18065 TTCAGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGA 18006 Query 53363 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 53422 || || || || | || || | || || ||||| ||||| |||| | || | Sbjct 18005 ATGCCCTTGCTCACCGGAGACCCCTCGTACGTCTCGTACGGTCCCTCCTGGGCGGCCATC 17946 Query 53423 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 53482 || || || || || | |||||||| || ||||| || || |||| || ||| || | Sbjct 17945 TCGCAGCTAGCTTCCAGCGCACCGTAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTC 17886 Query 53483 TGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 53542 || || ||| || || | || | | | || ||||| || || | || || Sbjct 17885 TGCGCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGG 17826 Query 53543 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAA 53602 || || |||||||| || | || | | | || ||| | ||||| || | || || Sbjct 17825 ACGCCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAG 17766 Query 53603 TAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTC 53659 | || | || ||||| || || | ||| | | || ||| ||| | || || ||| Sbjct 17765 AAGTTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTC 17709 Query 53660 AGTTTGAGAAAATCAAATTGTCCATCT-ATT--ACAAACATGTTCAATGCAATAGATGCC 53716 || || |||||| | | || | | || ||||||||||| ||||| || ||| Sbjct 17708 AGCTTCGCGAAATCATACGTACGGTCGGACTGGACGAACATGTTCAACGCAATCGAGGCC 17649 Query 53717 AGATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGAT 53774 || || || || || || || | | || || || | | ||||| |||||||| | Sbjct 17648 AGGTTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGT 17591 Query 53775 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 53834 || ||||||||||| || | ||||| || || || || || ||||| ||||| | Sbjct 17590 TAGAGCACTTGATGGTGCCGATGTTTTGCTGGTTGCTTTTGCGATTGCACGCGTCCTTGT 17531 Query 53835 AAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACAC 53894 | || ||| | || || || || | ||||||||| || ||||| ||| | | Sbjct 17530 ACAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCT 17471 Query 53895 GAGCCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACAATCGT 53950 | ||||||| | ||| | | | ||| ||| |||| || ||||| Sbjct 17470 GCGCCTTTACCTGGCGGAT--GAAGCGGCC--CTCCTTCTCATAGCCCGTGTACAACTTC 17415 Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || ||||| || ||||| || | ||||||| ||||| || | ||| |||||||| | Sbjct 17414 TCGAACTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTC 17355 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 ||| | ||| ||| ||| || | ||| || ||||| |||||||| || || || Sbjct 17354 CACGTTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGAATCCAGAGCGCGTAGAAC 17295 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 | || | | | ||||| || || || || || || ||||| | ||| | | Sbjct 17294 ATGTCCCGTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAAAAACTCAAAC 17235 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 | ||| |||||||| |||| ||| |||| | | || ||||| || || || ||| Sbjct 17234 ACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCCGGCCGCTTATTGCCGCCC 17175 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 ||||| | ||| | || ||||| || || || | || ||| || | | || || || Sbjct 17174 TGATCGACGTACCGTGCCGTGTTGTTGTACACGCGCAGCATCGGCACCAACCCGTTCGAA 17115 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGAC 54308 || || || |||||||| || |||| | || || || | | | || | | | Sbjct 17114 ATTCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCC 17057 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || || || ||||| | |||||| | || | ||| || |||||||| | Sbjct 17056 CGATGCCACCGGCAGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCTT 16997 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | || || || || |||| | || ||||| || |||| ||| |||| || Sbjct 16996 CGATGCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTAG 16937 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 |||| || | ||| || || || || ||||| | || || || ||||| |||| Sbjct 16936 CCGCCGCGAACATGGTCGGCGAGGCATGGGTAAAGTAACGCTCCGAGAGCAGATTATACG 16877 Query 54489 TCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548 ||||||| || | || || ||| ||| || || | ||||| ||||| | ||| | Sbjct 16876 TCTCGATCGCAGCCTCGATGTCCGTGCCATGGATGCCGATGGCGACGCGCATCAGCATAT 16817 Query 54549 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTT 54608 |||| || || || || |||||| || || |||| ||| || || |||| |||| Sbjct 16816 GCTGCGGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTT 16757 Query 54609 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 | || || ||||||||||| ||||| || |||||||||||| | || || || Sbjct 16756 TGAAGCCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 16702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593466559465200