Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2173 165 7e-36 >seq2173 Length=41539 Score = 165 bits (182), Expect = 7e-36 Identities = 710/1109 (64%), Gaps = 34/1109 (3%) Strand=Plus/Minus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 |||||| || |||| | || | ||||||| || ||||||||||| |||||||| || Sbjct 18570 GTCGACCGTGAACTGGATCGCATTTACGGCGGGCTTCGTGCGCAAATAGTACATGCCAGT 18511 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTC 132997 ||||| ||| |||||||| ||||| || || || | ||| | ||||| Sbjct 18510 CTTCAGGCCCATCTTCCACGCGTGGAAGTGCATCGACGTCAGCTTGCCGTAGTTCGGTTC 18451 Query 132998 GGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCAT 133057 || || | || | ||| || ||| || ||||| | | | |||||||| ||||| Sbjct 18450 CGCCACGTGGATGTTGAACGACTGCGACTGGTCGATGAACGCACCCCGGTCGGCTGCCAT 18391 Query 133058 GTTTATTATACACTTTGATTTGA-TCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCT 133116 | || || ||| | | ||||||| |||| ||| | |||| || | || Sbjct 18390 CTGGATGC-ACGTTTTCACCGAAATCTCCCAAACCGTTTTGTACAGATCGCGCACTTCCT 18332 Query 133117 GTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATT 133176 ||||||| || |||||||| | || ||||| | ||||| || |||| || | Sbjct 18331 TCGGTATTTGCTCGATGTTCTGGATCGAGCCGTTGTGGGCCAGGATTGTGTTCTTCATAT 18272 Query 133177 CCGGAGTGT---AAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTT 133233 | | || | | || | | | || | |||| || | ||||| ||||| | Sbjct 18271 C---ATCGTCCCACAGACCGTGCGTGGTCAGATCCTTGATCAGGTGGTGGTTCACCACCT 18215 Query 133234 GAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATT 133293 |||||||||| | |||||||| | | || || || ||||| |||| ||||| || | Sbjct 18214 GAAACTCGCCCGACAGAACGCGCCGGTTGTAAACGTTGGACGTATACGGCTCGAACGACT 18155 Query 133294 CGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGT 133353 |||||||||| | || || ||||||| ||||| ||||| ||| | || || |||| Sbjct 18154 CGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCGTCGGCATCGGCGCGAGCAGCAGTGAGT 18095 Query 133354 TTCTTACGCCGTACTTGTTTATGTTGCACTGCAAT-TCGTTCCAGTCCCACAGATT-GTT 133411 | | || |||| ||| || || || || ||| ||| | |||||| | || Sbjct 18094 TGCGCACACCGTGTTTGGCAATCTTTTCCTTCAGCGTCGC-CCAATTCCACAGGTCCGTC 18036 Query 133412 GGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCAC 133471 || | | |||| |||||| | ||| ||| ||| ||||||| Sbjct 18035 GGTACCTT-------GTTCCACATGTCGTACT---------GCAGAATGCCCTTGCTCAC 17992 Query 133472 CGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTC 133531 |||| || ||||| || || ||||| | ||||| |||||||||||| || Sbjct 17991 CGGAGACCCCTCGTACGTCTCGTACGGTCCCTCCTGGGCGGCCATCTCGCAGCTAGCTTC 17932 Query 133532 CAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTG-GCATCGTCGC 133590 || || | |||| ||||| || || | |||| | ||| || || | | Sbjct 17931 CAGCGCACCGTAGTAGATGGTCTCAAATATCTGCTGATTGA-GCTTCTGCGCCTCCGCAC 17873 Query 133591 TATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGA 133650 | ||||| | || | | | | | ||||| || |||| |||||| | ||||| |||| Sbjct 17872 TCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGACGCCGATACCGA 17813 Query 133651 TGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGA 133710 | || || || | || | || || || | | || ||| ||| ||||||| Sbjct 17812 TCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAGTTCACGTCGA 17753 Query 133711 TGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAA 133770 | |||||||| | ||||| | ||||| | | | ||||||| | | ||| Sbjct 17752 TAATCTTGTTCAAGTTGCGCGTCACGATTTTGGCTACCTCTTTCAGCTTCGCGAAATCAT 17693 Query 133771 ATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGG 133830 | || | || ||| | |||| || |||| | ||||| ||| || || || || | Sbjct 17692 ACGTACGGTCG--GAC-TGGACGAACATGTTCAACGCAATCGAGGCCAGGTTGCACACCG 17636 Query 133831 CCGTCTCGTTCT-CGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATG 133889 || |||| || || || | |||| || ||||||| ||| ||||| ||| |||||| Sbjct 17635 CCACTTCGTCCTTCGACG-AGTACTCCACAATCTCGGTGCAAAGGTTAGAGCACTTGATG 17577 Query 133890 GTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGC 133949 ||||| | |||| || ||||| | |||||| |||||||| ||||||||||| Sbjct 17576 GTGCCGATGTTTTGCTGGTTGCTTTTGCGATTGCACGCGTCCTTGTACAGCATGTACGGT 17517 Query 133950 CCGCCGGTTTCGACGTTGGTCTCGACGAT 133978 |||| || || || | || |||| ||| Sbjct 17516 ACGCCCGTCTCCACCTGGGATTCGATGAT 17488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433648701660580