Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2173 933 0.0 >seq2173 Length=41539 Score = 933 bits (1034), Expect = 0.0 Identities = 1375/1944 (71%), Gaps = 23/1944 (1%) Strand=Plus/Minus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 || ||||| || || ||||| || || ||| |||| || || ||||| | ||| |||||| Sbjct 18575 GTTTTGTCGACCGTGAACTGGATCGCATTTACGGCGGGCTTCGTGCGCAAATAGTACATG 18516 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || |||||||| |||||||||||||||| || || |||||||||| || || || || Sbjct 18515 CCAGTCTTCAGGCCCATCTTCCACGCGTGGAAGTGCATCGACGTCAGCTTGCCGTAGTTC 18456 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || ||| || | ||||||||||| ||| ||||| ||||| || || ||||| Sbjct 18455 GGTTCCGCCACGTGGATGTTGAACGACTGCGACTGGTCGATGAACGCACCCCGGTCGGCT 18396 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | || | || || ||| || ||||| || || |||||||| | | | Sbjct 18395 GCCATCTGGATGCACGTTTTCACCGAAATCTCCCAAACCGTTTTGTACAGATCGCGCACT 18336 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 || |||||| ||||| |||||| || ||||| | | | ||| || || Sbjct 18335 TCCTTCGGTATTTGCTCGATGTTCTGGATCGAGCCGTTGTGGGCCAGGATTGTGTTCTTC 18276 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || ||||| ||||| |||| | ||||| ||| |||| ||| || |||||||||| Sbjct 18275 ATATCATCGTCCCACAGACCGTGCGTGGTCAGATCCTTGATCAGGTGGTGGTTCACCACC 18216 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 ||||||||||| |||| ||||| || | ||||| |||||| || |||| ||||| || Sbjct 18215 TGAAACTCGCCCGACAGAACGCGCCGGTTGTAAACGTTGGACGTATACGGCTCGAACGAC 18156 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| |||| || || || |||||||| |||||||||||||| | ||| || ||| Sbjct 18155 TCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCGTCGGCATCGGCGCGAGCAGCAGTGAG 18096 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 || | || ||||| || | ||| || ||| ||| ||| ||| | |||||| || | Sbjct 18095 TTGCGCACACCGTGTTTGGCAATCTTTTCCTTCAGCGTCGCCCAATTCCACAGGTC---C 18039 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 | || || |||| |||||| ||||| |||| | ||| ||| |||| || ||| Sbjct 18038 GTCGGTACCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTCACCGGAGACCCCTCG 17979 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 ||||| |||||||| || | ||||| | |||||||| || |||| ||| ||||| Sbjct 17978 TACGTCTCGTACGGTCCCTCCTGGGCGGCCATCTCGCAGCTAGCTTCCAGCGCACCGTAG 17919 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCA-ATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || || ||||| || || | || || | ||| ||| | || | || |||||||| | Sbjct 17918 TAGATGGTCTCAAATATCTGCTGATTGAGCTTCTGCGCCTCCG-CACTCTCGTACGGGAA 17860 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881 | ||||| | |||||| || ||||||||||| ||||| ||||||||||| |||| Sbjct 17859 GCCCATCAAGATGAACGCATCAGCCATACCCTGGACGCCGATACCGATCGGACGGTGGCG 17800 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || ||||| || || || |||| || || | ||| ||||| | ||||||| Sbjct 17799 CATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAGTTCACGTCGATAATCTTGTTCAA 17740 Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001 ||| | ||||| ||||| | || | || || | ||| || | | Sbjct 17739 GTTGCGCGTCACGATTTTGGCTACCTCTTTCAGCTTCGCGAAATC--ATACGTACGGTCG 17682 Query 23002 TAC--AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 || || ||| |||| | || |||||||| || ||||| || ||||| ||||| || Sbjct 17681 GACTGGACGAACATGTTCAACGCAATCGAGGCCAGGTTGCACACCGCCACTTCGTCCTTC 17622 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 |||| |||||| ||||| ||||| || || || ||||| || ||||| | || | Sbjct 17621 GACGAGTACTCCACAATCTCGGTGCAAAGGTTAGAGCACTTGATGGTGCCGATGTTTTGC 17562 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 ||||||||||| |||||||||| |||||||| ||||||||||| ||||||||| ||| Sbjct 17561 TGGTTGCTTTTGCGATTGCACGCGTCCTTGTACAGCATGTACGGTACGCCCGTCTCCACC 17502 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCT 23239 || || ||||||||||| ||||| | ||| || | || | || | | | | ||| Sbjct 17501 TGGGATTCGATGATCGCAAACCACAGATCCTGCGCCTTTACCTGGCGGATGAAGCGGCCC 17442 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || | ||| || ||||||| || || || | || | | ||||||| ||| Sbjct 17441 TCCTTCTCATAGCCCGTGTACAACTTCTCGAACTCTTCGCCCCACGAATCGGCCAATCCG 17382 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | ||| ||||| | ||||||| || || || ||||| ||| || Sbjct 17381 GGACAGTCGTGCGGGCACATCAAACTCCACGTTTCGTTCGCCTCCACGCGCTGCATGAAC 17322 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 |||||||| ||||| || |||||||||| || || |||||||||||||| ||||||||| Sbjct 17321 AGATCCGGAATCCAGAGCGCGTAGAACATGTCCCGTGCGCGCACCTCCTCCTTGCCGGTG 17262 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 || || |||| ||||||||| || ||||| || | ||||||||||| ||||| | |||| Sbjct 17261 TTTTTCTTCAGATCCAAAAACTCAAACACATCGCCGTGCCACGGCTCCAGGTAGATGGCA 17202 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 ||||| ||||| | |||||||||||||||||||||||| || ||||||||||||||||| Sbjct 17201 AACGCACCCGGCCGCTTATTGCCGCCCTGATCGACGTACCGTGCCGTGTTGTTGTACACG 17142 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599 | ||||||||||| | ||||| || ||| ||| | | || || || Sbjct 17141 CGCAGCATCGGCACCAACCCGTTCGAAATTCCGTTCGTGCCGGAGATGTACGTTCCCTTC 17082 Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 || || | | ||| |||| | || ||||| ||| | || || || |||| ||||| Sbjct 17081 GCCCGGATGCAGTGCACGTTCAGCCCGATGCCACCGGCAGACTTGGAGATCAGTGCGCAC 17022 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC---TTTGGTCGCGACCAAGAAA 23716 || ||||| |||||||||||||| ||||||||||| || ||||| | || || Sbjct 17021 TGCTTCAGCGTGTCGTAGATGCCTTCGATGCTGTCGTCGGACATGGTC---AGCAGAAAG 16965 Query 23717 CACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 || || |||| || |||| ||||||| |||| ||||| ||||| ||| || Sbjct 16964 CAAGACGACAGCTGGGGACGCT----GCGTAGCCGCCGCGAACATGGTCGGCGAGGCATG 16909 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 |||||||| | | ||| | ||||| ||||| ||||| || || || |||||| || Sbjct 16908 GGTAAAGTAACGCTCCGAGAGCAGATTATACGTCTCGATCGCAGCCTCGATGTCCGTGCC 16849 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892 || || ||||||||||||||||||| ||| | || || |||||||| | ||| || Sbjct 16848 ATGGATGCCGATGGCGACGCGCATCAGCATATGCTGCGGCCTCTCGACAATCTTGCCCTT 16789 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 || || |||| ||| ||||| | || ||||| || || ||||||| || ||||| Sbjct 16788 GATCTTCAACAAATACGAACGCTCCAGGGTTTTGAAGCCGAAATAGTTGTACCCGAAGTC 16729 Query 23953 ACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATG 24012 |||||||| | || |||||||| | ||||| || || || ||| | | ||| || Sbjct 16728 ACGATCGTAAATAATAGCCGAATTTAGACGGTCTGCGTTCGCCATGATCACCTCGTAGTG 16669 Query 24013 AAAATTCGATATCATCGGCGTTTT 24036 ||| | ||| ||||| || | ||| Sbjct 16668 AAAGTCCGAAATCATGGGTGATTT 16645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445574915470800