Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2173 325 5e-84 >seq2173 Length=41539 Score = 325 bits (360), Expect = 5e-84 Identities = 1191/1855 (64%), Gaps = 34/1855 (2%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 ||||| ||||| || | ||||||||| || || || || || | |||| ||| || Sbjct 18542 GCGGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 18483 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 ||||| ||| || ||| || |||| || || | ||||| || | || || Sbjct 18482 TGCATCGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 18423 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 || |||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 18422 TGGTCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 18363 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 62300 |||| ||||| || | |||| | | |||| | | |||| | ||||| || Sbjct 18362 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTA---TTTGCTCGATGTTCTGGATC 18306 Query 62301 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62360 || || | ||| || | ||||| || ||||| | ||| | | ||| Sbjct 18305 GAGCCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTC 18246 Query 62361 AAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTG 62420 | | | | | || || |||| || || || || || || |||| || | ||| || Sbjct 18245 AGATCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTG 18186 Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 |||| || |||||||| || | |||||| || || ||||||||||| || || || Sbjct 18185 TAAACGTTGGACGTATACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAA 18126 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 || |||||||| || || | || | || | | ||||| | | || || || Sbjct 18125 GCCGTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCC 18066 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGA 62600 || || |||||||||| || |||| |||||| || || ||| Sbjct 18065 TTCAGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGA 18006 Query 62601 ATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGT 62660 || || || || | || || | || || || || ||||| |||| | || | Sbjct 18005 ATGCCCTTGCTCACCGGAGACCCCTCGTACGTCTCGTACGGTCCCTCCTGGGCGGCCATC 17946 Query 62661 TTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCT 62720 | || || || || | |||||||| || ||||| ||||| |||| || ||| || | Sbjct 17945 TCGCAGCTAGCTTCCAGCGCACCGTAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTC 17886 Query 62721 TGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGA 62780 || || |||| || || | || | | | || ||||| || || | || || Sbjct 17885 TGCGCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGG 17826 Query 62781 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAA 62840 || || |||||||| || | || | | | || ||| | ||||| || | || || Sbjct 17825 ACGCCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAG 17766 Query 62841 TAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTC 62897 | || | || ||||| || || | || | | || ||| ||| | || || ||| Sbjct 17765 AAGTTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTC 17709 Query 62898 AGTTTGAGAAAATCAAATCGCCCATCT-ATT--ACAAACATGTTCAATGCAACAGATGCC 62954 || || |||||| | | || | | || ||||||||||| |||| || ||| Sbjct 17708 AGCTTCGCGAAATCATACGTACGGTCGGACTGGACGAACATGTTCAACGCAATCGAGGCC 17649 Query 62955 AGATTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGAT 63012 || || ||||| || || || | | || || || | | ||||| |||||||| | Sbjct 17648 AGGTTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGT 17591 Query 63013 TACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 63072 || |||||||| || || | ||||| || || || || || ||||| ||||| | Sbjct 17590 TAGAGCACTTGATGGTGCCGATGTTTTGCTGGTTGCTTTTGCGATTGCACGCGTCCTTGT 17531 Query 63073 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 63132 | || ||| | || || || || | ||| ||||| || ||||| ||| | | Sbjct 17530 ACAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCT 17471 Query 63133 GAGCCTTTA--TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGA--GTATACAATCGT 63188 | ||||||| | ||| | | | | ||| ||| |||| || ||||| Sbjct 17470 GCGCCTTTACCTGGCGGAT--GAAGCGGCC--CTCCTTCTCATAGCCCGTGTACAACTTC 17415 Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || ||||| || | |||||| ||||| || | ||| |||||||| | Sbjct 17414 TCGAACTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTC 17355 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 ||| | ||| ||| ||| || | ||| || ||||| |||||||| || || || Sbjct 17354 CACGTTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGAATCCAGAGCGCGTAGAAC 17295 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 | || | || | ||||| || || || || || || ||||| | ||| | | Sbjct 17294 ATGTCCCGTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAAAAACTCAAAC 17235 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | ||| |||||||| |||| ||| ||||| | | || ||||| || || || ||| Sbjct 17234 ACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCCGGCCGCTTATTGCCGCCC 17175 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 ||||| | ||| | || ||||| || || || | || ||| || | | ||||| || Sbjct 17174 TGATCGACGTACCGTGCCGTGTTGTTGTACACGCGCAGCATCGGCACCAACCCGTTCGAA 17115 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGAC 63546 || || || || |||||||| || ||| | || || || | | | || | | | Sbjct 17114 ATTCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCC 17057 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | || || || || || ||||| | |||||| | || | |||||| |||||||||| Sbjct 17056 CGATGCCACCGGCAGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCTT 16997 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | ||||| || ||| |||| | || ||||| || |||| ||| |||| || Sbjct 16996 CGATGCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTAG 16937 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 |||| || | ||| || || || || ||||| | || || || ||||| |||| Sbjct 16936 CCGCCGCGAACATGGTCGGCGAGGCATGGGTAAAGTAACGCTCCGAGAGCAGATTATACG 16877 Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 |||| || || | || || ||| ||| || || | ||||| ||||| | ||| | Sbjct 16876 TCTCGATCGCAGCCTCGATGTCCGTGCCATGGATGCCGATGGCGACGCGCATCAGCATAT 16817 Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846 |||| || || || ||||| ||| || || |||||||| || || |||| |||| Sbjct 16816 GCTGCGGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTT 16757 Query 63847 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 | || || ||||||||||| ||||| || |||||||||||| ||||||| || Sbjct 16756 TGAAGCCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 16702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629547053977200