Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2173 293 3e-74 >seq2173 Length=41539 Score = 293 bits (324), Expect = 3e-74 Identities = 1182/1855 (64%), Gaps = 34/1855 (2%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 ||||| ||||| || | ||||||||| || || || || || | |||| ||| || Sbjct 18542 GCGGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 18483 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 ||||| ||| || ||| || |||| || || | ||||| || | || || Sbjct 18482 TGCATCGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 18423 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 || |||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 18422 TGGTCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 18363 Query 65040 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 65093 |||| ||||| || | |||| | | |||| | | |||| | ||||| || Sbjct 18362 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTA---TTTGCTCGATGTTCTGGATC 18306 Query 65094 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153 || || | |||| || | ||||| || ||||| | ||| | | ||| Sbjct 18305 GAGCCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTC 18246 Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213 | | | | | || || | || || || ||||| || || |||| || | ||| || Sbjct 18245 AGATCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTG 18186 Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 |||| || |||||||| || | ||||| || || ||||||||||| || || || Sbjct 18185 TAAACGTTGGACGTATACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAA 18126 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333 || |||||||| || || | || | || | | ||||| | | || || || Sbjct 18125 GCCGTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCC 18066 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 65393 || || | |||||||||| || |||| |||||| || ||| Sbjct 18065 TTCAGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGA 18006 Query 65394 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 65453 || || || || | || || | || || ||||| ||||| |||| | || | Sbjct 18005 ATGCCCTTGCTCACCGGAGACCCCTCGTACGTCTCGTACGGTCCCTCCTGGGCGGCCATC 17946 Query 65454 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 65513 || || || || || | |||||||| || ||||| || || |||| || ||| || | Sbjct 17945 TCGCAGCTAGCTTCCAGCGCACCGTAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTC 17886 Query 65514 TGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 65573 || || ||| || || | || | | | || ||||| || || | || || Sbjct 17885 TGCGCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGG 17826 Query 65574 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAA 65633 || || |||||||| || | || | | | || ||| | ||||| || | || || Sbjct 17825 ACGCCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAG 17766 Query 65634 TAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTC 65690 | || | || ||||| || || | || | | || ||| ||| | || || ||| Sbjct 17765 AAGTTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTC 17709 Query 65691 AGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCC 65747 || || |||||| | || || || ||||||||||| |||| || ||| Sbjct 17708 AGCTTCGCGAAATCATACGTACGGTCGGACTGGACGAACATGTTCAACGCAATCGAGGCC 17649 Query 65748 AGATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGAT 65805 || || || || || || || | | || || || | | ||||| |||||||| | Sbjct 17648 AGGTTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGT 17591 Query 65806 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 65865 || ||||||||||| || | ||||| || || || || || ||||| ||||| | Sbjct 17590 TAGAGCACTTGATGGTGCCGATGTTTTGCTGGTTGCTTTTGCGATTGCACGCGTCCTTGT 17531 Query 65866 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 65925 | || ||| | || || || || | ||| ||||| || ||||| ||| | | Sbjct 17530 ACAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCT 17471 Query 65926 GAGCCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACAATCGT 65981 | ||||||| | ||| | | | ||| ||| |||| || ||||| Sbjct 17470 GCGCCTTTACCTGGCGGAT--GAAGCGGCC--CTCCTTCTCATAGCCCGTGTACAACTTC 17415 Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 |||||||| || ||||| || | ||||||| ||||| || | ||| |||||||| | Sbjct 17414 TCGAACTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTC 17355 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 ||| | ||| ||| ||| || | ||| || ||||| |||||||| || || || Sbjct 17354 CACGTTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGAATCCAGAGCGCGTAGAAC 17295 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | || | | | ||||| || || || || || || ||||| | ||| | | Sbjct 17294 ATGTCCCGTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAAAAACTCAAAC 17235 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 | ||| |||||||| |||| ||| ||||| | | || ||||| || || || ||| Sbjct 17234 ACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCCGGCCGCTTATTGCCGCCC 17175 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 ||||| | ||| | || ||||| || || || | || ||| || | | || || || Sbjct 17174 TGATCGACGTACCGTGCCGTGTTGTTGTACACGCGCAGCATCGGCACCAACCCGTTCGAA 17115 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAGAC 66339 | || || || |||||||| || |||| | || || || | | | || | | | Sbjct 17114 ATTCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCC 17057 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | || || || || || ||||| | |||||| | || | ||| || |||||||| | Sbjct 17056 CGATGCCACCGGCAGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCTT 16997 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459 | || || || || |||| | || ||||| || |||| ||| |||| || Sbjct 16996 CGATGCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTAG 16937 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 66519 |||| || | ||| || || || || ||||| | || || || ||||| |||| Sbjct 16936 CCGCCGCGAACATGGTCGGCGAGGCATGGGTAAAGTAACGCTCCGAGAGCAGATTATACG 16877 Query 66520 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579 |||| || || | || || ||| ||| || || | ||||| ||||| | ||| | Sbjct 16876 TCTCGATCGCAGCCTCGATGTCCGTGCCATGGATGCCGATGGCGACGCGCATCAGCATAT 16817 Query 66580 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 66639 |||| || || || || |||||| || || |||||||| || || |||| |||| Sbjct 16816 GCTGCGGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTT 16757 Query 66640 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 | || || ||||||||||| ||||| || |||||||||||| |||| || || Sbjct 16756 TGAAGCCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 16702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657890073646600