Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2173 226 4e-54 seq6562 206 4e-48 seq10406 149 9e-31 >seq2173 Length=41539 Score = 226 bits (250), Expect = 4e-54 Identities = 375/533 (70%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 96831 GTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATAAA 96890 ||||| ||||| | ||||||| | | |||| ||||| |||||||||||||| Sbjct 17128 GTGCCGATGCTGCGCGTGTACAACAACACGGCACGGTACGTCGATCAGGGCGGCAATAAG 17187 Query 96891 CGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATC 96950 ||||| || || | ||| ||||| |||| || ||||||| || || ||||| ||| | Sbjct 17188 CGGCCGGGTGCGTTTGCCATCTACCTGGAGCCGTGGCACGGCGATGTGTTTGAGTTTTTG 17247 Query 96951 GAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTC 97010 || || |||||| | ||| || |||| || || ||||| |||| || || ||| Sbjct 17248 GATCTGAAGAAAAACACCGGCAAGGAGGAGGTGCGCGCACGGGACATGTTCTACGCGCTC 17307 Query 97011 TGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC-TGGAGCCTAATGTG 97069 ||| | || ||| |||||||| ||||||| | | || | || ||||| | ||||| Sbjct 17308 TGGATTCCGGATCTGTTCATGCAGCGCGTGGA-GGCGAACGAAACGTGGAGTTTGATGTG 17366 Query 97070 CCC---CGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTA 97126 ||| ||||| || ||||| || |||||| |||||||||||||| ||| ||| Sbjct 17367 CCCGCACGACT-GT--CCCGGATTGGCCGATTCGTGGGGCGAAGAGTTCGAGAAGTTGTA 17423 Query 97127 CACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAA 97186 ||||| ||| ||| | |||||||| | | | | | || | || | || |||||| Sbjct 17424 CACGGGCTATGAGAAGGAGGGCCGCTTCATCCGCCAGGTAAAGGCGCAGGATCTGTGGTT 17483 Query 97187 GGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGT 97246 || ||| | | ||||| ||||| || |||||||| || |||||||| ||| Sbjct 17484 TGCGATCATCGAATCCCAGGTGGAGACGGGCGTACCGTACATGCTGTACAAGGA-CGCGT 17542 Query 97247 G-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGG 97305 | |||||||| |||||||| | || | |||||||||||| |||| || || ||||| | Sbjct 17543 GCAATCGCAAAAGCAACCAGCAAAACATCGGCACCATCAAGTGCTCTAACCTTTGCACCG 17602 Query 97306 AAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCG 97358 | ||||| |||||| | || |||||| ||| || ||| ||||| ||| Sbjct 17603 AGATTGTGGAGTACTCGTCGAAGGACGAAGTGGCGGTGTGCAACCTGGCCTCG 17655 Score = 152 bits (168), Expect = 8e-32 Identities = 331/490 (68%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833 ||||| || | ||||| ||||| | || |||||||| |||||| | || | ||| | | Sbjct 18083 ACGGTGTGCGCAACTCACTGCTGCTCGCGCCGATGCCGACGGCTTCGACGGCACAAATTT 18142 Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893 | ||||| || || || || |||| ||||| ||| | ||| | | ||| | || Sbjct 18143 TGGGCAACAACGAGTCGTTCGAGCCGTATACGTCCAACGTTTACAACCGGCGCGTTCTGT 18202 Query 97894 CTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTG 97952 | || |||||||| || ||| ||| || | | || | || | || | |||| Sbjct 18203 CGGGCGAGTTTCAGGTGGTGAACCACCACCTGAT-CAAGGATCTGACCACGCACGGTCTG 18261 Query 97953 TGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATT-AC 98011 ||| ||||||| ||| | ||| || | |||| || || || || ||||| | Sbjct 18262 TGGGACGATGATATGAAGAACACAATCCTGGCCCACAACGGCTCGATCCAGAACATCGAG 18321 Query 98012 CATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGAC 98071 || || ||| | || ||||| | ||||| || || ||||||||| || || || Sbjct 18322 CAA-ATACCGAAGGAAGTGCGCGATCTGTACAAAACGGTTTGGGAGATTTCGGTGAAAAC 18380 Query 98072 GCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCT 98131 | ||| | ||||| |||||| | |||| | ||| |||||| || |||||||| | Sbjct 18381 GTGCATCCAGATGGCAGCCGACCGGGGTGCGTTCATCGACCAGTCGCAGTCGTTCAACAT 18440 Query 98132 GTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAA 98191 |||| || || || | |||| | |||| ||||| ||||| |||| ||||| | Sbjct 18441 CCACGTGGCGGAACCGAACTACGGCAAGCTGACGTCGATGCACTTCCACGCGTGGAAGAT 18500 Query 98192 GGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATT 98251 |||||| ||||| |||||||||||| || | || ||| | ||| ||||| || | || Sbjct 18501 GGGCCTGAAGACTGGCATGTACTATTTGCGCACGAAGCCCGCCGTAAATGCGATCCAGTT 18560 Query 98252 TACGGTGGAC 98261 ||||| ||| Sbjct 18561 CACGGTCGAC 18570 >seq6562 Length=274692 Score = 206 bits (228), Expect = 4e-48 Identities = 392/571 (69%), Gaps = 16/571 (3%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| ||||| || || || | ||| ||||||||||| || ||| | Sbjct 193986 TTGCGGAAGAAGATGACGCCGGCGCGCGGCCCGCGGAGCGTCTTGTGCGTCGTCGTGCTG 193927 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA-AT 127220 || | ||| ||||| || || || |||| | |||| | || ||||| | || Sbjct 193926 ACGACGTCCGCGTACTCGAACGGCGACGGGATGATGCCGGCCGCGACCA-GCCCGGAGAT 193868 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGG-CTGCATCGGCAATCTCTCGGAATCGTC 127279 ||| || || || || | ||| | | ||| ||| ||| | ||||| ||||| || Sbjct 193867 GTGCGCCATGTCCGCGAACAGGTACGCCCCGTTCTGGTTCG-CGATCTCCCGGAAGCGCT 193809 Query 127280 TATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATA 127339 | ||||| | || || | ||||| | ||||||| ||||| | | | || ||||| | Sbjct 193808 TGTAGTCGAGGCAGCGCGAGTAGCACGAGATGCCGGCGATGATCACCTTCGGCTTGAACA 193749 Query 127340 GATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGT 127399 | ||| |||| | | ||| | ||||||| || || ||| || |||||||||| Sbjct 193748 GCCGGGCCGTCTCCTCCATCTTGTCGTAGTCGATCAGCCCGGTCACCGGGTCCACCTTGT 193689 Query 127400 ACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGT-TGCG----GAATC 127447 |||||||||| ||||| |||| || || ||||| | ||| |||| ||| | Sbjct 193688 ACGGCATGCTCTCGAAGAAGATGGACGTGGCGGAGATTTTCTTCGTCTGCGTCATGAAGC 193629 Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507 |||||||||||||||| ||||| || || || || |||||||| | |||||||| | | Sbjct 193628 CGTGCGTCAGGTGGCCCCCGTCTGGGAGGTCCAGCCCCATGATGCGCCCGTGCGGCTCGA 193569 Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTC 127567 | | | ||||||||||| |||||||| ||| || |||||||| || || | Sbjct 193568 TCAGTGCCGTGTACACGGCGAAGTTGGCGGGCGAACCGGAGTACGGCTGCACGTTGCAGC 193509 Query 127568 CCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGA 127627 |||| || | | | | | |||| ||| |||| |||||| ||||| |||| Sbjct 193508 CCCACTCCGCCGGATCGAGCCGGTACGCCTCGAGCGCACGCTTCTGTGCCAGCAGCTCGA 193449 Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTA 127658 | ||||| ||||| || ||||| ||||| Sbjct 193448 TCTCGTCGATGAACTCATTGCCACCGTAGTA 193418 >seq10406 Length=614891 Score = 149 bits (164), Expect = 9e-31 Identities = 349/526 (66%), Gaps = 3/526 (1%) Strand=Plus/Plus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| |||||| ||| ||||| | |||| Sbjct 178530 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTCATGCTGACGTCGGTCGTGGAGC 178589 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 ||||||| | | ||| |||||||||| || |||| || ||||||| || | |||| Sbjct 178590 AGGCGTTCTTTCTCTACAAAGCGTGCACGGTTGACCACGGGTACTCGCACGACATCTGCC 178649 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 |||||| |||||| | |||||||| || | || ||| ||| ||| || || | Sbjct 178650 TCAACATCGAGCAGTACCAGGACATCAAGAAGCAGGTGCAGGTGACGACGTCCACCTTCC 178709 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 | ||||||||| | || | | |||||||| | | |||| | || || || Sbjct 178710 ACCAGTGGAACAACATCGCGATGTACGTGGTGCCGATCGTGCTGGCGCTGTTTCTCGGTG 178769 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 | | ||| ||||||| | ||| | ||| || || ||| || || || Sbjct 178770 CGTGGTCCGATCGGCGCGGCCGTAAGCTGCCCCTCATACTCGGGCTCTGCGGGAAGCTGG 178829 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCA---AGAGCTGGCCCGTAGAGTATATAA 50153 | | ||||| ||| | || |||| | || | ||||| || ||||| || | Sbjct 178830 TGTACTCGGTGATGATCGTGGTGAACACGCGCATGCCGTCGTGGCCGGTGGAGTACATCA 178889 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 ||||||| || || | ||||| | || ||||| || || | | || ||||| | | Sbjct 178890 TCTACACCGCCACCATCCCGAGCGTGCTGACCGGGGCGGACATTGCGATCTTCGCGTCCT 178949 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 | || || ||||| | || | |||| |||||| | |||||||| || | || Sbjct 178950 GTTTCGCGTACATCTCGGACATCACGACGGTGGAGGAGCGCACGCTTCGCATCACGATAC 179009 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGG 50319 |||| || ||||||||||||||||| | ||| || ||| |||| Sbjct 179010 TGGACGCGACGTACCTGAGCACGATGCCGATCGGGGTCGCGCTCGG 179055 Score = 149 bits (164), Expect = 9e-31 Identities = 349/526 (66%), Gaps = 3/526 (1%) Strand=Plus/Plus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| |||||| ||| ||||| | |||| Sbjct 179976 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTCATGCTGACGTCGGTCGTGGAGC 180035 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 ||||||| | | ||| |||||||||| || |||| || ||||||| || | |||| Sbjct 180036 AGGCGTTCTTTCTCTACAAAGCGTGCACGGTTGACCACGGGTACTCGCACGACATCTGCC 180095 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 |||||| |||||| | |||||||| || | || ||| ||| ||| || || | Sbjct 180096 TCAACATCGAGCAGTACCAGGACATCAAGAAGCAGGTGCAGGTGACGACGTCCACCTTCC 180155 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 | ||||||||| | || | | |||||||| | | |||| | || || || Sbjct 180156 ACCAGTGGAACAACATCGCGATGTACGTGGTGCCGATCGTGCTGGCGCTGTTTCTCGGTG 180215 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 | | ||| ||||||| | ||| | ||| || || ||| || || || Sbjct 180216 CGTGGTCCGATCGGCGCGGCCGTAAGCTGCCCCTCATACTCGGGCTCTGCGGGAAGCTGG 180275 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCA---AGAGCTGGCCCGTAGAGTATATAA 50153 | | ||||| ||| | || |||| | || | ||||| || ||||| || | Sbjct 180276 TGTACTCGGTGATGATCGTGGTGAACACGCGCATGCCGTCGTGGCCGGTGGAGTACATCA 180335 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 ||||||| || || | ||||| | || ||||| || || | | || ||||| | | Sbjct 180336 TCTACACCGCCACCATCCCGAGCGTGCTGACCGGGGCGGACATTGCGATCTTCGCGTCCT 180395 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 | || || ||||| | || | |||| |||||| | |||||||| || | || Sbjct 180396 GTTTCGCGTACATCTCGGACATCACGACGGTGGAGGAGCGCACGCTTCGCATCACGATAC 180455 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGG 50319 |||| || ||||||||||||||||| | ||| || ||| |||| Sbjct 180456 TGGACGCGACGTACCTGAGCACGATGCCGATCGGGGTCGCGCTCGG 180501 Score = 149 bits (164), Expect = 9e-31 Identities = 349/526 (66%), Gaps = 3/526 (1%) Strand=Plus/Minus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| |||||| ||| ||||| | |||| Sbjct 428215 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTCATGCTGACGTCGGTCGTGGAGC 428156 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 ||||||| | | ||| |||||||||| || |||| || ||||||| || | |||| Sbjct 428155 AGGCGTTCTTTCTCTACAAAGCGTGCACGGTTGACCACGGGTACTCGCACGACATCTGCC 428096 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 |||||| |||||| | |||||||| || | || ||| ||| ||| || || | Sbjct 428095 TCAACATCGAGCAGTACCAGGACATCAAGAAGCAGGTGCAGGTGACGACGTCCACCTTCC 428036 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 | ||||||||| | || | | |||||||| | | |||| | || || || Sbjct 428035 ACCAGTGGAACAACATCGCGATGTACGTGGTGCCGATCGTGCTGGCGCTGTTTCTCGGTG 427976 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 | | ||| ||||||| | ||| | ||| || || ||| || || || Sbjct 427975 CGTGGTCCGATCGGCGCGGCCGTAAGCTGCCCCTCATACTCGGGCTCTGCGGGAAGCTGG 427916 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCA---AGAGCTGGCCCGTAGAGTATATAA 50153 | | ||||| ||| | || |||| | || | ||||| || ||||| || | Sbjct 427915 TGTACTCGGTGATGATCGTGGTGAACACGCGCATGCCGTCGTGGCCGGTGGAGTACATCA 427856 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 ||||||| || || | ||||| | || ||||| || || | | || ||||| | | Sbjct 427855 TCTACACCGCCACCATCCCGAGCGTGCTGACCGGGGCGGACATTGCGATCTTCGCGTCCT 427796 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 | || || ||||| | || | |||| |||||| | |||||||| || | || Sbjct 427795 GTTTCGCGTACATCTCGGACATCACGACGGTGGAGGAGCGCACGCTTCGCATCACGATAC 427736 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGG 50319 |||| || ||||||||||||||||| | ||| || ||| |||| Sbjct 427735 TGGACGCGACGTACCTGAGCACGATGCCGATCGGGGTCGCGCTCGG 427690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740740868757400