Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9255 167 4e-37 seq24829 158 2e-34 seq15346 158 2e-34 seq21943 152 8e-33 seq14010 152 8e-33 >seq9255 Length=141020 Score = 167 bits (184), Expect = 4e-37 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| |||||||||||||| || ||| Sbjct 119691 GCCAAGCGTCACCGGAAGGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCGGCCATC 119750 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| ||||||||||| |||||| |||| || || | || || || | Sbjct 119751 CGTCGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGCCTGATTTACGAGGAAACC 119810 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | |||||| ||| ||| |||| || ||| | || |||||| Sbjct 119811 CGCGGTGTGCTGAAGGTGTTCCTCGAGAACGTCATCCGCGACGCTGTGACGTACACCGAG 119870 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | || || || |||| || || || Sbjct 119871 CACGCCAAGCGGAAGACGGTCACCGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGT 119930 Query 16673 CG 16674 || Sbjct 119931 CG 119932 Score = 167 bits (184), Expect = 4e-37 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| |||||||||||||| || ||| Sbjct 121751 GCCAAGCGTCACCGGAAGGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCGGCCATC 121692 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| ||||||||||| |||||| |||| || || | || || || | Sbjct 121691 CGTCGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGCCTGATTTACGAGGAAACC 121632 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | |||||| ||| ||| |||| || ||| | || |||||| Sbjct 121631 CGCGGTGTGCTGAAGGTGTTCCTCGAGAACGTCATCCGCGACGCTGTGACGTACACCGAG 121572 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | || || || |||| || || || Sbjct 121571 CACGCCAAGCGGAAGACGGTCACCGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGT 121512 Query 16673 CG 16674 || Sbjct 121511 CG 121510 Score = 167 bits (184), Expect = 4e-37 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| |||||||||||||| || ||| Sbjct 123652 GCCAAGCGTCACCGGAAGGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCGGCCATC 123711 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| ||||||||||| |||||| |||| || || | || || || | Sbjct 123712 CGTCGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGCCTGATTTACGAGGAAACC 123771 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | |||||| ||| ||| |||| || ||| | || |||||| Sbjct 123772 CGGGGTGTGCTGAAGGTGTTCCTCGAGAACGTCATCCGCGACGCTGTGACGTACACCGAG 123831 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | || || || |||| || || || Sbjct 123832 CACGCCAAGCGGAAGACGGTCACCGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGT 123891 Query 16673 CG 16674 || Sbjct 123892 CG 123893 Score = 82.4 bits (90), Expect = 1e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| |||||||||||||| || ||| Sbjct 124704 GCCAAGCGTCACCGGAAGGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCGGCCATC 124763 Query 16493 CGTCGTCTGGCTCGTCGTGG 16512 |||||||||||||| ||||| Sbjct 124764 CGTCGTCTGGCTCGCCGTGG 124783 >seq24829 Length=3243 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 1764 GCCAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 1705 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| || || ||||| |||| || || |||| || |||| Sbjct 1704 CGGCGTCTGGCCCGTCGTGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACG 1645 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 1644 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAG 1585 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| |||| || || |||| || || ||| Sbjct 1584 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGCCAGGGC 1525 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| | ||| Sbjct 1524 CGCACGCTGTACGGCTTCGGAGGCTAA 1498 >seq15346 Length=25906 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 13760 GCCAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 13819 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| || || ||||| |||| || || |||| || |||| Sbjct 13820 CGGCGTCTGGCCCGTCGTGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACG 13879 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 13880 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAG 13939 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| |||| || || |||| || || ||| Sbjct 13940 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGCCAGGGC 13999 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| | ||| Sbjct 14000 CGCACGCTGTACGGCTTCGGAGGCTAA 14026 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 21898 GCCAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 21957 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| || || ||||| |||| || || |||| || |||| Sbjct 21958 CGGCGTCTGGCCCGTCGTGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACG 22017 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 22018 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAG 22077 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| |||| || || |||| || || ||| Sbjct 22078 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGCCAGGGC 22137 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| | ||| Sbjct 22138 CGCACGCTGTACGGCTTCGGAGGCTAA 22164 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 25144 GCCAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 25203 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| || || ||||| |||| || || |||| || |||| Sbjct 25204 CGGCGTCTGGCCCGTCGTGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACG 25263 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 25264 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAG 25323 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| |||| || || |||| || || ||| Sbjct 25324 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGCCAGGGC 25383 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| | ||| Sbjct 25384 CGCACGCTGTACGGCTTCGGAGGCTAA 25410 >seq21943 Length=2924 Score = 152 bits (168), Expect = 8e-33 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 697 GCCAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 756 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| || || ||||| |||| || || |||| || |||| Sbjct 757 CGGCGTCTGGCCCGTCGTGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACG 816 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 817 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAG 876 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||| | || || ||||| |||||| ||||||| |||| || || |||| || || ||| Sbjct 877 CACCCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGCCAGGGC 936 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| | ||| Sbjct 937 CGCACGCTGTACGGCTTCGGAGGCTAA 963 >seq14010 Length=2961 Score = 152 bits (168), Expect = 8e-33 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 2531 GCCAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 2472 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| || || ||||| |||| || || |||| || |||| Sbjct 2471 CGGCGTCTGGCCCGTCGTGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACG 2412 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 2411 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAG 2352 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||| | || || ||||| |||||| ||||||| |||| || || |||| || || ||| Sbjct 2351 CACCCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGCCAGGGC 2292 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| | ||| Sbjct 2291 CGCACGCTGTACGGCTTCGGAGGCTAA 2265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79043779839945